Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KU217_RS07930 Genome accession   NZ_CP077835
Coordinates   1685693..1686799 (+) Length   368 a.a.
NCBI ID   WP_001187342.1    Uniprot ID   A0ABX6CGL8
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680693..1691799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS07895 (KU217_07900) grxD 1681025..1681366 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  KU217_RS07900 (KU217_07905) - 1681594..1682802 (+) 1209 WP_071210538.1 aspartate aminotransferase family protein -
  KU217_RS07905 (KU217_07910) - 1682854..1683285 (-) 432 WP_071210537.1 CBS domain-containing protein -
  KU217_RS07910 (KU217_07915) - 1683426..1683800 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  KU217_RS07915 (KU217_07920) - 1684335..1684568 (-) 234 WP_000616034.1 hypothetical protein -
  KU217_RS07920 (KU217_07925) - 1684784..1685143 (+) 360 WP_000185571.1 hypothetical protein -
  KU217_RS07925 (KU217_07930) - 1685259..1685585 (+) 327 WP_071210535.1 hypothetical protein -
  KU217_RS07930 (KU217_07935) pilA 1685693..1686799 (+) 1107 WP_001187342.1 signal recognition particle-docking protein FtsY Machinery gene
  KU217_RS07935 (KU217_07940) - 1686988..1687584 (+) 597 WP_000102943.1 nitroreductase family protein -
  KU217_RS07940 (KU217_07945) - 1687808..1688479 (+) 672 WP_071210534.1 DUF2057 domain-containing protein -
  KU217_RS07945 (KU217_07950) - 1688537..1688836 (-) 300 WP_136512590.1 cyd operon YbgE family protein -
  KU217_RS07950 (KU217_07955) cydX 1688837..1688938 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  KU217_RS07955 (KU217_07960) cydB 1688952..1690097 (-) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -
  KU217_RS07960 (KU217_07965) - 1690094..1691680 (-) 1587 WP_000622647.1 cytochrome ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39919.72 Da        Isoelectric Point: 4.9872

>NTDB_id=507676 KU217_RS07930 WP_001187342.1 1685693..1686799(+) (pilA) [Acinetobacter baumannii strain DETAB-P65]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=507676 KU217_RS07930 WP_001187342.1 1685693..1686799(+) (pilA) [Acinetobacter baumannii strain DETAB-P65]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTGGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCTGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGATCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451