Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KU217_RS04445 Genome accession   NZ_CP077835
Coordinates   930279..931667 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 925279..936667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS04420 (KU217_04450) fdhD 925712..926503 (+) 792 WP_016685869.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  KU217_RS04425 (KU217_04455) - 926623..927015 (+) 393 WP_000119198.1 YkvA family protein -
  KU217_RS04430 (KU217_04460) - 927120..928187 (+) 1068 WP_071210777.1 4-phosphoerythronate dehydrogenase -
  KU217_RS04435 (KU217_04465) epmA 928184..929158 (+) 975 WP_000059546.1 EF-P lysine aminoacylase EpmA -
  KU217_RS04440 (KU217_04470) - 929216..930196 (-) 981 WP_000451853.1 Tim44-like domain-containing protein -
  KU217_RS04445 (KU217_04475) radA/sms 930279..931667 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  KU217_RS04450 (KU217_04480) - 932157..933563 (+) 1407 WP_000070815.1 amino acid permease -
  KU217_RS04455 (KU217_04485) - 933704..933928 (+) 225 WP_001255198.1 lipoprotein -
  KU217_RS04460 (KU217_04490) lysA 933951..935201 (+) 1251 WP_000011142.1 diaminopimelate decarboxylase -
  KU217_RS04465 (KU217_04495) dapF 935207..936052 (+) 846 WP_000923480.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=507666 KU217_RS04445 WP_000048860.1 930279..931667(-) (radA/sms) [Acinetobacter baumannii strain DETAB-P65]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=507666 KU217_RS04445 WP_000048860.1 930279..931667(-) (radA/sms) [Acinetobacter baumannii strain DETAB-P65]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAGGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGAGTGCTTGGCGGTGGTTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCGCTTTATATTACGGGTGAGGAATCACTGTCAC
AGGTTGCCTTACGTGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCGAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGCGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CAGGTTCAATTGTCATGATTAGCCGTGAAGGCACTCGCCCACTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATTTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCTTGCATGAAGCCTTGACTGAGG
CGATGCAACTCAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422