Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KU217_RS00930 Genome accession   NZ_CP077835
Coordinates   209255..212086 (-) Length   943 a.a.
NCBI ID   WP_021510198.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204255..217086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS00915 (KU217_00915) omp33-36 204397..205296 (-) 900 WP_000733005.1 porin Omp33-36 -
  KU217_RS00920 (KU217_00920) - 206289..207995 (+) 1707 WP_000016111.1 GGDEF domain-containing protein -
  KU217_RS00925 (KU217_00925) - 208250..209206 (+) 957 WP_025465223.1 helix-turn-helix transcriptional regulator -
  KU217_RS00930 (KU217_00930) uvrA 209255..212086 (-) 2832 WP_021510198.1 excinuclease ABC subunit UvrA Machinery gene
  KU217_RS00935 (KU217_00935) - 212383..212985 (+) 603 WP_071210478.1 TetR/AcrR family transcriptional regulator -
  KU217_RS00940 (KU217_00940) - 212989..213966 (+) 978 WP_001256573.1 zinc-binding dehydrogenase -
  KU217_RS00945 (KU217_00945) - 214032..214385 (+) 354 WP_002053763.1 DUF1304 domain-containing protein -
  KU217_RS00950 (KU217_00950) - 214438..214779 (+) 342 WP_000263326.1 GlpM family protein -
  KU217_RS00955 (KU217_00955) tenA 214829..215503 (-) 675 WP_000899418.1 thiaminase II -
  KU217_RS00960 (KU217_00960) - 215766..216848 (+) 1083 WP_000680211.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104258.56 Da        Isoelectric Point: 6.5117

>NTDB_id=507642 KU217_RS00930 WP_021510198.1 209255..212086(-) (uvrA) [Acinetobacter baumannii strain DETAB-P65]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=507642 KU217_RS00930 WP_021510198.1 209255..212086(-) (uvrA) [Acinetobacter baumannii strain DETAB-P65]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGTACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTGATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGGCAGCGCC
GTTATGTCGAATCACTTTCGGCCTATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAAGGT
TTATCACCAGCCATTGCGATTGAGCAAAAGTCTACTAGCCATAACCCACGTTCAACGGTTGGTACGATTACCGAAATTTA
TGACTATTTGCGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAAAACCTTGAGGAAGGCACTGCACTCATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTCGTTCGTGCCCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGCGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACATCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGTGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTCAGTCCTGAAA
AACTCATTCCCAACCCTGAGCTCGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTCGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
GTTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGCGGCCGTAAACATACTCGCGTACAAC
CGTTTGAGGGAATCTTGCCTCACCTTGAGCGCCGTTATCGTGAAACTGAAAGTAACTATGTACGAGACGATTTAGCACAA
TATTTGTCTAATGCAGCTTGTGATGCATGTGGCGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCCGACATTACCCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGCTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGCTAATTC
GCTTACGTGATTTGGGCAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGTGTTGTCATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
GCTCACAGGTCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCGGGTAAATCAACACTGATTAACCGTACTCTGCTTCCATTAGCAGCAACACAGCTCAACGGTGC
AACGACCTTAACCGCTGAAAAGTTTGATTCAATTGATGGTCTACAACACCTTGATAAAGTTGTTGATATTGACCAAAGCC
CGATTGGACGCACGCCACGTTCTAACCCTGCAACGTACACAGGGCTATTTACACCAATCCGTGAGTTATTTGCTCAAACG
CCAGAAGCGAAAGCCCGTGGTTATAGTGCAGGCCGTTTCTCGTTTAACGTGAAAGGTGGACGCTGTGAAGCCTGTGAAGG
CGACGGCATGATTAAGGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCCTGTCATGGCAAACGTTATA
ACCGTGAAACGCTTGAAGTCGGCTATAAAGGCAAAAACATTTCTGATGTCTTAGAAATGACGGTTGAAGATGCTGCTGAA
TTCTTTAGTGCCATTCCAGTCATCCACCGCCGTTTAGAAACCTTAACTCAGGTGGGCTTAGGCTATATTCGTTTAGGTCA
AGCTGCTACTACACTTTCTGGTGGTGAAGCGCAACGTGTAAAACTTGCACGTGAGTTAGCAAAACGAGATACAGGTAAAA
CGCTTTATATCTTGGATGAACCGACAACAGGTCTACATTTCCATGATATTGCTAAGTTGCTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTGATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTGGTCGACTTAGG
CCCTGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGAACACCTGAACAAGTAGCTGAGGTTGAGATTTCCCACA
CTGGGCGCTTCTTAAAACCGATGCTTAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(625-862)

UvrA DNA-binding domain (UvrA_DNA-bind)

(292-399)

UvrA interaction domain (UvrA_inter)

(132-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.25

100

0.563
  uvrA Streptococcus pneumoniae TIGR4

56.25

100

0.563
  uvrA Streptococcus pneumoniae D39

56.25

100

0.563