Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SANR_RS08515 Genome accession   NC_022239
Coordinates   1733046..1733834 (-) Length   262 a.a.
NCBI ID   WP_003035535.1    Uniprot ID   I0SFK2
Organism   Streptococcus anginosus C238     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728046..1738834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS08495 (SANR_1648) gatA 1729332..1730798 (-) 1467 WP_003035492.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SANR_RS08500 (SANR_1649) gatC 1730798..1731100 (-) 303 WP_003026120.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SANR_RS08505 (SANR_1650) - 1731177..1732166 (-) 990 Protein_1670 amino acid--tRNA ligase-related protein -
  SANR_RS08510 (SANR_1651) - 1732471..1733046 (-) 576 WP_020999784.1 cysteine hydrolase family protein -
  SANR_RS08515 (SANR_1652) codY 1733046..1733834 (-) 789 WP_003035535.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SANR_RS08520 (SANR_1653) - 1733996..1735210 (-) 1215 WP_003035582.1 pyridoxal phosphate-dependent aminotransferase -
  SANR_RS08525 (SANR_1654) - 1735362..1735814 (+) 453 WP_020999785.1 universal stress protein -
  SANR_RS08530 (SANR_1655) - 1735860..1737248 (-) 1389 WP_020999786.1 Cof-type HAD-IIB family hydrolase -
  SANR_RS08535 (SANR_1656) - 1737313..1738275 (+) 963 WP_020999787.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29724.06 Da        Isoelectric Point: 5.0797

>NTDB_id=50764 SANR_RS08515 WP_003035535.1 1733046..1733834(-) (codY) [Streptococcus anginosus C238]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHDLSIFPIETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELSGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDIFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=50764 SANR_RS08515 WP_003035535.1 1733046..1733834(-) (codY) [Streptococcus anginosus C238]
ATGGCAAACTTATTAGCAAAAACAAGAAAAATAACATCTATTTTGCGTCGTTCAGATGAGCGATTGCAGGATGAACTACC
TTATAATGCAATTACCCAACAATTAGCTGAAATTATGGATTGCAATGCTTGTATTGTAAATAGCAAGGGTCGTCTTTTGG
GGTATTTCATGCGCTACAAGACAAACAATGATCGTGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAGTATGTT
CGCACCGCAAATTTGATGTATGATACTGAGGCCAATCTTCCAGTCAATCATGATTTATCTATTTTTCCTATTGAGACAAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCAATTCATGTTTCTGGGATTCGTTTAGGGACATTGATTGTTTGGC
GCAATGATAAAGAATTTGACGATGATGATTTGATCTTGGTTGAAATTGCAAGTACAGTGGTTGGTATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCCGTAACTATGGCTGTAAATACTTTGTCTTATTCAGA
ACTACGAGCTGTTTCTGCTATTTTAGGTGAATTAAGTGGCAATGAAGGACAGCTAACAGCTTCAGTGATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCTCTACGTAAACTAGAAAGTGCAGGCATTATCGAAAGTCGTTCTCTAGGA
ATGAAAGGAACCTATCTTAAAGTTCTTATCCCCGATATCTTTGAAGAGATTAAAAAGCGAGATTACTGA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469

Multiple sequence alignment