Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMULJ23_RS05685 Genome accession   NC_017768
Coordinates   1158631..1160385 (-) Length   584 a.a.
NCBI ID   WP_014678041.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1158631..1165972 1158631..1160385 within 0


Gene organization within MGE regions


Location: 1158631..1165972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS05685 (SMULJ23_1101) rcrQ 1158631..1160385 (-) 1755 WP_014678041.1 ABC transporter ATP-binding protein Regulator
  SMULJ23_RS05690 (SMULJ23_1102) rcrP 1160375..1162177 (-) 1803 WP_002283869.1 ABC transporter ATP-binding protein Regulator
  SMULJ23_RS05695 (SMULJ23_1103) rcrR 1162181..1162615 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMULJ23_RS05700 (SMULJ23_1104) queC 1163167..1163820 (+) 654 WP_014678042.1 7-cyano-7-deazaguanine synthase QueC -
  SMULJ23_RS05705 (SMULJ23_1105) queD 1163820..1164266 (+) 447 WP_002266457.1 6-carboxytetrahydropterin synthase QueD -
  SMULJ23_RS05710 (SMULJ23_1106) queE 1164263..1164979 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  SMULJ23_RS05715 (SMULJ23_1107) queF 1164992..1165480 (+) 489 WP_014678043.1 preQ(1) synthase -
  SMULJ23_RS05720 (SMULJ23_1108) - 1165589..1165972 (+) 384 WP_002281981.1 DUF3021 family protein -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64604.60 Da        Isoelectric Point: 5.7674

>NTDB_id=50763 SMULJ23_RS05685 WP_014678041.1 1158631..1160385(-) (rcrQ) [Streptococcus mutans LJ23]
MENKKKSLLNQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVVSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTREEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=50763 SMULJ23_RS05685 WP_014678041.1 1158631..1160385(-) (rcrQ) [Streptococcus mutans LJ23]
ATGGAAAATAAGAAGAAATCATTATTAAACCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCCGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGACAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTAATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGGTATCCACTGTTATCATGGC
CAAGAGTCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTGTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAGAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATTACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCTTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

99.486

100

0.995

Multiple sequence alignment