Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I0K11_RS02525 Genome accession   NZ_CP065160
Coordinates   547262..548641 (+) Length   459 a.a.
NCBI ID   WP_003643928.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain ZDY2013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 542262..553641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K11_RS02500 - 542262..542954 (+) 693 WP_003640924.1 matrixin family metalloprotease -
  I0K11_RS02505 - 543144..544475 (-) 1332 WP_003643927.1 aminopeptidase C -
  I0K11_RS02510 rpiA 544551..545234 (-) 684 WP_003640926.1 ribose-5-phosphate isomerase RpiA -
  I0K11_RS02515 - 545243..545539 (-) 297 WP_003640927.1 GNAT family N-acetyltransferase -
  I0K11_RS02520 - 545678..546214 (+) 537 WP_003640928.1 dUTP diphosphatase -
  I0K11_RS02525 radA 547262..548641 (+) 1380 WP_003643928.1 DNA repair protein RadA Machinery gene
  I0K11_RS02530 - 548657..549832 (+) 1176 WP_196241845.1 PIN/TRAM domain-containing protein -
  I0K11_RS02535 gltX 550158..551648 (+) 1491 WP_003640932.1 glutamate--tRNA ligase -
  I0K11_RS02540 cysS 551926..553338 (+) 1413 WP_024521299.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50019.32 Da        Isoelectric Point: 7.7217

>NTDB_id=507587 I0K11_RS02525 WP_003643928.1 547262..548641(+) (radA) [Lactiplantibacillus plantarum strain ZDY2013]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=507587 I0K11_RS02525 WP_003643928.1 547262..548641(+) (radA) [Lactiplantibacillus plantarum strain ZDY2013]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TGGTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCAAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCCGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGATCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGAACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
ATTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGGATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.849

98.257

0.667
  radA Streptococcus pneumoniae D39

67.849

98.257

0.667
  radA Streptococcus pneumoniae R6

67.849

98.257

0.667
  radA Streptococcus pneumoniae TIGR4

67.849

98.257

0.667
  radA Streptococcus mitis SK321

67.849

98.257

0.667
  radA Streptococcus mitis NCTC 12261

67.849

98.257

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.346

0.651