Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   I3J23_RS16770 Genome accession   NZ_CP065159
Coordinates   3249380..3249844 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244380..3254844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS16750 (I3J23_16750) - 3244860..3246680 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  I3J23_RS16755 (I3J23_16755) - 3246706..3247875 (-) 1170 WP_007611083.1 aminotransferase A -
  I3J23_RS16760 (I3J23_16760) - 3248076..3248237 (-) 162 WP_007409608.1 hypothetical protein -
  I3J23_RS16765 (I3J23_16765) cheV 3248426..3249337 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  I3J23_RS16770 (I3J23_16770) kre 3249380..3249844 (-) 465 WP_003154622.1 YkyB family protein Regulator
  I3J23_RS16775 (I3J23_16775) - 3249967..3251259 (-) 1293 WP_046559548.1 MFS transporter -
  I3J23_RS16780 (I3J23_16780) - 3251335..3251829 (-) 495 WP_088005492.1 L,D-transpeptidase family protein -
  I3J23_RS16785 (I3J23_16785) - 3251904..3252767 (-) 864 WP_015388306.1 metallophosphoesterase -
  I3J23_RS16790 (I3J23_16790) fadH 3252911..3253675 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  I3J23_RS19825 - 3253786..3254334 (+) 549 Protein_3268 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=507573 I3J23_RS16770 WP_003154622.1 3249380..3249844(-) (kre) [Bacillus amyloliquefaciens strain GXU-1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=507573 I3J23_RS16770 WP_003154622.1 3249380..3249844(-) (kre) [Bacillus amyloliquefaciens strain GXU-1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929