Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I3J23_RS10050 Genome accession   NZ_CP065159
Coordinates   1947349..1947639 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942349..1952639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS10010 (I3J23_10010) darA 1942367..1942696 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  I3J23_RS10015 (I3J23_10015) - 1942709..1943149 (+) 441 WP_004264730.1 DUF327 family protein -
  I3J23_RS10020 (I3J23_10020) holB 1943161..1944150 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  I3J23_RS10025 (I3J23_10025) ricT 1944153..1944980 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  I3J23_RS10030 (I3J23_10030) yabA 1944995..1945354 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  I3J23_RS10035 (I3J23_10035) - 1945414..1946157 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I3J23_RS10040 (I3J23_10040) - 1946144..1946443 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  I3J23_RS10045 (I3J23_10045) rsmI 1946418..1947299 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I3J23_RS10050 (I3J23_10050) abrB 1947349..1947639 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  I3J23_RS10055 (I3J23_10055) metG 1948122..1950113 (+) 1992 WP_014304193.1 methionine--tRNA ligase -
  I3J23_RS10060 (I3J23_10060) - 1950189..1950956 (+) 768 WP_041481816.1 TatD family hydrolase -
  I3J23_RS10065 (I3J23_10065) - 1951091..1952416 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=507547 I3J23_RS10050 WP_169510469.1 1947349..1947639(-) (abrB) [Bacillus amyloliquefaciens strain GXU-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=507547 I3J23_RS10050 WP_169510469.1 1947349..1947639(-) (abrB) [Bacillus amyloliquefaciens strain GXU-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979