Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   I3J23_RS03405 Genome accession   NZ_CP065159
Coordinates   644311..645063 (-) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 639311..650063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS03380 (I3J23_03380) mreC 639747..640610 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  I3J23_RS03385 (I3J23_03385) mreB 640641..641654 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  I3J23_RS03390 (I3J23_03390) radC 641746..642441 (-) 696 WP_003152646.1 DNA repair protein RadC -
  I3J23_RS03395 (I3J23_03395) - 642473..643042 (-) 570 WP_003152645.1 Maf family protein -
  I3J23_RS03400 (I3J23_03400) - 643183..644184 (-) 1002 WP_046559966.1 SPOR domain-containing protein -
  I3J23_RS03405 (I3J23_03405) comC 644311..645063 (-) 753 WP_044053500.1 A24 family peptidase Machinery gene
  I3J23_RS03410 (I3J23_03410) - 645203..646495 (-) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  I3J23_RS03415 (I3J23_03415) - 646554..649196 (-) 2643 WP_014305516.1 valine--tRNA ligase -
  I3J23_RS03420 (I3J23_03420) - 649649..649840 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=507523 I3J23_RS03405 WP_044053500.1 644311..645063(-) (comC) [Bacillus amyloliquefaciens strain GXU-1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=507523 I3J23_RS03405 WP_044053500.1 644311..645063(-) (comC) [Bacillus amyloliquefaciens strain GXU-1]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGTTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584