Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I3J23_RS02560 Genome accession   NZ_CP065159
Coordinates   485482..486249 (-) Length   255 a.a.
NCBI ID   WP_046559881.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 480482..491249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS02540 (I3J23_02540) - 480684..481496 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  I3J23_RS02545 (I3J23_02545) ccpN 481522..482160 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  I3J23_RS02550 (I3J23_02550) glyS 482261..484300 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  I3J23_RS02555 (I3J23_02555) glyQ 484293..485180 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  I3J23_RS02560 (I3J23_02560) recO 485482..486249 (-) 768 WP_046559881.1 DNA repair protein RecO Machinery gene
  I3J23_RS02565 (I3J23_02565) - 486286..486429 (-) 144 WP_007408286.1 YqzL family protein -
  I3J23_RS02570 (I3J23_02570) era 486585..487490 (-) 906 WP_003152978.1 GTPase Era -
  I3J23_RS02575 (I3J23_02575) - 487471..487881 (-) 411 WP_003152976.1 cytidine deaminase -
  I3J23_RS02580 (I3J23_02580) - 488005..488379 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  I3J23_RS02585 (I3J23_02585) ybeY 488360..488833 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  I3J23_RS02590 (I3J23_02590) - 488834..490966 (-) 2133 WP_046559882.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29263.92 Da        Isoelectric Point: 8.7950

>NTDB_id=507516 I3J23_RS02560 WP_046559881.1 485482..486249(-) (recO) [Bacillus amyloliquefaciens strain GXU-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQKTKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=507516 I3J23_RS02560 WP_046559881.1 485482..486249(-) (recO) [Bacillus amyloliquefaciens strain GXU-1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGTAGCGTCTCGTTAAAACAGAAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89