Detailed information NTG0050749

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SANR_RS04980
• Genome accession: NC_022239
• Coordinates: 1006482..1007594 (+)
• Length: 370 a.a.
• NCBI ID: WP_003034483.1
• Uniprot ID: I0SIW6
• Organism: Streptococcus anginosus C238
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1001482..1012594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SANR_RS04960 (SANR_0973)	-	1003215..1003553 (+)	339	WP_003024641.1	ATP cone domain-containing protein	-
SANR_RS04965 (SANR_0974)	rpsU	1003751..1003927 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
SANR_RS04970 (SANR_0975)	mscL	1004168..1004548 (-)	381	WP_003031453.1	large conductance mechanosensitive channel protein MscL	-
SANR_RS04975 (SANR_0976)	dnaG	1004704..1006479 (+)	1776	WP_003034548.1	DNA primase	-
SANR_RS04980 (SANR_0977)	rpoS	1006482..1007594 (+)	1113	WP_003034483.1	RNA polymerase sigma factor RpoD	Regulator
SANR_RS04985 (SANR_0978)	-	1007613..1007942 (+)	330	WP_003024629.1	metal-sulfur cluster assembly factor	-
SANR_RS04990 (SANR_0979)	brnQ	1008097..1009425 (+)	1329	WP_003034439.1	branched-chain amino acid transport system II carrier protein	-
SANR_RS04995 (SANR_0980)	ccdA2	1009710..1010420 (+)	711	WP_003024626.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SANR_RS05000 (SANR_0981)	-	1010584..1010997 (+)	414	Protein_965	redoxin domain-containing protein	-
SANR_RS05005 (SANR_0982)	msrB	1011010..1012128 (+)	1119	WP_041791349.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42466.12 Da
• Isoelectric Point: 4.4643

>NTDB_id=50749 SANR_RS04980 WP_003034483.1 1006482..1007594(+) (rpoS) [Streptococcus anginosus C238]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDRLVIPFTLEADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPNRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=50749 SANR_RS04980 WP_003034483.1 1006482..1007594(+) (rpoS) [Streptococcus anginosus C238]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAAATCAATGATCGGCTAGTCATTCCATTTACTTTGGAAGCTGATGGCATTGAAGATCTTCTTCAAC
GGATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTTTTAAATACAGAGGAAGAAGAA
GCTGAATTAACAGATGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTGAACGACCCTGTCCGTATGTATTTAAAGGAAAT
TGGTGTTGTTCCGTTATTGACCAATGAAGAAGAGCAAGAATTAGCTGTTCTTGTGGAGCAAGGCGACTTAGAAGCGAAAC
AACGTTTGGCAGAAGCGAATTTGCGGTTGGTTGTCTCTATTGCTAAGCGCTATGTTGGACGCGGCATGCAGTTTCTTGAC
TTGATTCAAGAAGGCAATATGGGATTGATGAAAGCCGTTGACAAGTTTGACTATACCAAAGGTTTCAAATTTTCGACCTA
TGCCACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCTGACCAAGCGCGTACGATTCGGATTCCGGTTCACATGG
TTGAGACAATCAATAAATTAGTGCGGGAGCAACGAAATCTTTTGCAAGAATTGGGACAAGATCCAACGCCAGAACAAATT
GCTGAGCGCATGGATATGACACCAGATAAAGTTCGTGAAATTTTGAAGATTGCCCAAGAGCCGGTCTCTCTTGAAACTCC
AATTGGAGAAGAAGATGATAGTCATCTTGGCGATTTCATTGAGGATGAAGTGATTGAAAATCCAGTTGATTACACAACAC
GTATTGTCCTACGTGAGCAATTAGACGAGGTTCTTGATACATTAACAGACCGTGAAGAAAATGTCCTACGTTTGCGTTTC
GGTCTAGATGATGGTAAAATGCGTACGCTGGAAGATGTTGGAAAAGTCTTTAACGTGACTCGTGAACGGATTCGACAAAT
TGAGGCCAAAGCCCTACGCAAATTGCGTCATCCAAATCGTAGCAAGCCACTTCGTGACTTTATTGAAGATTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

3D structure

• AlphaFold DB: I0SIW6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37