Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7994_RS15065 Genome accession   NZ_CP065152
Coordinates   3175073..3175702 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O150:H6 strain FEX669     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170073..3180702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7994_RS15045 (H7994_15040) ycbZ 3170473..3172233 (-) 1761 WP_000156501.1 Lon protease family protein -
  H7994_RS15050 (H7994_15045) matP 3172419..3172871 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  H7994_RS15055 (H7994_15050) ompA 3172949..3173989 (-) 1041 WP_001350588.1 porin OmpA -
  H7994_RS15060 (H7994_15055) sulA 3174345..3174854 (-) 510 WP_042020526.1 SOS-induced cell division inhibitor SulA -
  H7994_RS15065 (H7994_15060) sxy/tfoX 3175073..3175702 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7994_RS15070 (H7994_15065) yccS 3175665..3177827 (-) 2163 WP_123000998.1 YccS family putative transporter -
  H7994_RS15075 (H7994_15070) yccF 3177837..3178283 (-) 447 WP_001261236.1 YccF domain-containing protein -
  H7994_RS15080 (H7994_15075) helD 3178406..3180460 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=507468 H7994_RS15065 WP_000839153.1 3175073..3175702(+) (sxy/tfoX) [Escherichia coli O150:H6 strain FEX669]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=507468 H7994_RS15065 WP_000839153.1 3175073..3175702(+) (sxy/tfoX) [Escherichia coli O150:H6 strain FEX669]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1