Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KUY52_RS07740 Genome accession   NZ_CP077828
Coordinates   1632539..1633645 (+) Length   368 a.a.
NCBI ID   WP_071211017.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E351     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1627539..1638645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUY52_RS07705 (KUY52_07720) grxD 1627884..1628225 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  KUY52_RS07710 (KUY52_07725) - 1628453..1629661 (+) 1209 WP_000129953.1 aspartate aminotransferase family protein -
  KUY52_RS07715 (KUY52_07730) - 1629712..1630143 (-) 432 WP_000156920.1 CBS domain-containing protein -
  KUY52_RS07720 (KUY52_07735) - 1630284..1630658 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  KUY52_RS07725 (KUY52_07740) - 1631196..1631429 (-) 234 WP_000616034.1 hypothetical protein -
  KUY52_RS07730 (KUY52_07745) - 1631645..1632004 (+) 360 WP_000185571.1 hypothetical protein -
  KUY52_RS07735 (KUY52_07750) - 1632105..1632431 (+) 327 WP_000955083.1 hypothetical protein -
  KUY52_RS07740 (KUY52_07755) pilA 1632539..1633645 (+) 1107 WP_071211017.1 signal recognition particle-docking protein FtsY Machinery gene
  KUY52_RS07745 (KUY52_07760) - 1633835..1634431 (+) 597 WP_000102943.1 nitroreductase family protein -
  KUY52_RS07750 (KUY52_07765) - 1634657..1635328 (+) 672 WP_000175350.1 DUF2057 domain-containing protein -
  KUY52_RS07755 (KUY52_07770) - 1635401..1635925 (+) 525 WP_000593801.1 GNAT family N-acetyltransferase -
  KUY52_RS07760 (KUY52_07775) - 1635938..1636237 (-) 300 WP_085916945.1 cyd operon YbgE family protein -
  KUY52_RS07765 (KUY52_07780) cydX 1636238..1636339 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  KUY52_RS07770 (KUY52_07785) cydB 1636353..1637498 (-) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39900.68 Da        Isoelectric Point: 4.9845

>NTDB_id=507449 KUY52_RS07740 WP_071211017.1 1632539..1633645(+) (pilA) [Acinetobacter baumannii strain DETAB-E351]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGEHNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=507449 KUY52_RS07740 WP_071211017.1 1632539..1633645(+) (pilA) [Acinetobacter baumannii strain DETAB-E351]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCATAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGGCAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.724

86.685

0.448