Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BTD91_RS12905 Genome accession   NZ_CP065150
Coordinates   2868501..2869925 (-) Length   474 a.a.
NCBI ID   WP_077680482.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2863501..2874925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS12880 (BTD91_12880) - 2864106..2864759 (+) 654 WP_077680485.1 thiopurine S-methyltransferase -
  BTD91_RS12885 (BTD91_12885) purT 2864877..2866052 (-) 1176 WP_077680484.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BTD91_RS12890 (BTD91_12890) cdd 2866220..2867107 (-) 888 WP_077680483.1 cytidine deaminase -
  BTD91_RS12895 (BTD91_12895) - 2867424..2868101 (-) 678 WP_046224077.1 LrgB family protein -
  BTD91_RS12900 (BTD91_12900) - 2868104..2868475 (-) 372 WP_017057447.1 CidA/LrgA family protein -
  BTD91_RS12905 (BTD91_12905) sbcB 2868501..2869925 (-) 1425 WP_077680482.1 exodeoxyribonuclease I Machinery gene
  BTD91_RS12910 (BTD91_12910) - 2870108..2870980 (-) 873 WP_077680481.1 sterol desaturase family protein -
  BTD91_RS12915 (BTD91_12915) - 2871035..2872048 (-) 1014 WP_046224080.1 DUF2804 domain-containing protein -
  BTD91_RS12920 (BTD91_12920) - 2872196..2873230 (+) 1035 WP_077680480.1 AraC family transcriptional regulator -
  BTD91_RS12925 (BTD91_12925) - 2873235..2874185 (-) 951 WP_077680479.1 chromosome partitioning protein ParA -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54608.92 Da        Isoelectric Point: 4.9699

>NTDB_id=507447 BTD91_RS12905 WP_077680482.1 2868501..2869925(-) (sbcB) [Vibrio kanaloae strain R17]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITGITPQKAMTQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIAWPENDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVTMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLDLDSEALRDRLYTKRTELAEDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSHEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=507447 BTD91_RS12905 WP_077680482.1 2868501..2869925(-) (sbcB) [Vibrio kanaloae strain R17]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCGGCAAAAGACCGTCCAAG
TCAGTTTGCGGGGGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTATTGCCAGCCTCCTGCTG
ATTATCTGCCTGCACCTGAGGCCGCATTGATCACTGGTATCACGCCACAAAAAGCAATGACTCAAGGCCTACCTGAACCT
GAGTTTATCGCTAAGATTCATGCCGAACTTGCTAAGCCAAACACCACAAGCCTTGGCTACAACAGCATCCGATTCGATGA
CGAAGTAACGAGATACACCTGTTACCGTAACTTCATTGATCCGTATGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACATGCACTTCGCCCTGAAGGTATTGCTTGGCCAGAGAATGACGAAGGCTTCCCA
AGTTTCAAACTGGAACACCTCTCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
AACCATCGAATTAGCGAAAAAGCTAAAAGCCGCACAACCTAAGATGTTTGATTACCTCTATAACATGCGCCACAAGCGTA
AATTGAATGAGTTAGTCGACATCGTAACCATGACACCTCTAATGCACGTATCAGGCATGTTCGGCCGTGATTGTAATTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCCGTTATCGTGGTGGATTTAGCAAAAGATCCAAC
ACCTTTACTTGACCTAGATTCAGAAGCTTTACGTGACAGGCTCTATACTAAGCGCACTGAACTTGCTGAAGACGAGTTAC
CAGTACCAATTAAATTGGTTCATTTAAACAAGTGCCCTATTCTTGCGCCAGCAAAAACGCTGACCGCAGAAAACGCAGAA
ACTATTGGTATCGACCGTCAGCAATGTTTGAAAAACTTGGCACTGTTACGCGAACATCCAGAAATCCGTGAAAAATTGAT
TGGTTTGTACTCACACGAAAGAGAGTACGAGAAGAGTGACGATGTCGACACTCACCTTTACGATGGTTTCTTCTCACCAG
CCGATAAAACAGCGATGAACATCATTCGTGAAACAGACCCAAACAACTTGGCGGCTTTAGATATTACTTTTAGTGACGAA
CGAATTAAGCCTTTGTTGTTCCGTTATCGCGCTCGCCACTTTCCATGGACGCTCGACGAATCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAGTTCTATGAGAGCCGCTTAGAAGAGTACATGCTGAATCTAGAAAATCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCGATCTTAAAGGCGGTTTATCAGTACGTTGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.167

99.789

0.77