Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BTD91_RS12865 Genome accession   NZ_CP065150
Coordinates   2860612..2861793 (-) Length   393 a.a.
NCBI ID   WP_077680487.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2855612..2866793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS12850 (BTD91_12850) - 2856055..2856948 (-) 894 WP_077680490.1 LysR family transcriptional regulator -
  BTD91_RS12855 (BTD91_12855) - 2857112..2857996 (+) 885 WP_077680489.1 Vmh family MBL fold metallo-hydrolase -
  BTD91_RS12860 (BTD91_12860) - 2858422..2860468 (+) 2047 Protein_2407 response regulator -
  BTD91_RS12865 (BTD91_12865) cqsA 2860612..2861793 (-) 1182 WP_077680487.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BTD91_RS12870 (BTD91_12870) ihfA 2862597..2862893 (+) 297 WP_004734853.1 integration host factor subunit alpha -
  BTD91_RS12875 (BTD91_12875) - 2863005..2863781 (-) 777 WP_077680486.1 RelA/SpoT domain-containing protein -
  BTD91_RS12880 (BTD91_12880) - 2864106..2864759 (+) 654 WP_077680485.1 thiopurine S-methyltransferase -
  BTD91_RS12885 (BTD91_12885) purT 2864877..2866052 (-) 1176 WP_077680484.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44073.27 Da        Isoelectric Point: 6.9964

>NTDB_id=507446 BTD91_RS12865 WP_077680487.1 2860612..2861793(-) (cqsA) [Vibrio kanaloae strain R17]
MSNKFENKPLPSFIEERLNFYVQDLITPNKNQRHLVLGKRPKSNAVVMQSNDYLSLSHNVNIQKAHRDAISKHDDNVVMS
AIFLQDEQSKPAFETELAAYVGMETCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAYPFMHNNMN
HLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGKNGAGLVQSLGLTNKVDFITVSLAK
TFAYRAGAIFGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKNSDDKRDTLFKRVKTLTTGLKQIGFNIRSESQ
IVALECGSERNTEHVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTSQDIDHVLRVCDEAFHHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=507446 BTD91_RS12865 WP_077680487.1 2860612..2861793(-) (cqsA) [Vibrio kanaloae strain R17]
ATGAGTAATAAATTTGAAAATAAACCATTACCTTCCTTTATCGAAGAACGCTTGAACTTTTATGTTCAAGACCTCATTAC
CCCAAACAAAAACCAAAGGCACTTGGTATTAGGGAAACGCCCCAAGTCGAACGCCGTGGTTATGCAGAGTAATGACTACC
TATCACTATCGCATAACGTGAACATCCAAAAAGCACATAGGGATGCGATCTCAAAGCACGATGATAATGTAGTGATGTCT
GCCATATTTTTGCAAGATGAACAATCTAAGCCAGCGTTTGAAACCGAACTCGCAGCCTATGTCGGGATGGAAACCTGTTT
GCTGTCCCAATCTGGTTGGGCTGCGAATATTGGGCTGTTGCAAACTATCTGCCCACCTAATACTCCGGTGTATATCGATT
TCTTTGCACACATGTCCCTATGGGAAGGAATTCGTGCTGCTGGAGCTCATGCTTACCCGTTTATGCACAACAACATGAAT
CACCTGCGTAAACAGATCCAACGTAATGGATCAGGCGTGATTGTGGTCGACTCTGTTTATAGCACCATTGGCACTATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCTTTGGTCGTTGATGAGTCGCACTCGTTAGGTACTC
ATGGTAAAAATGGGGCGGGTTTGGTTCAATCTTTAGGGCTGACCAACAAAGTGGATTTTATTACCGTGAGTTTAGCCAAG
ACATTCGCTTATCGTGCCGGTGCCATTTTTGGTCCTAAACGGCTGTCAGAGACCCTTCCATTTGTCGCTTACCCCGCGAT
TTTCAGCTCTACCGTGCTGCCACAAGAAGTCATTCGCTTAGAAAAAACGTTAGAGGTAATCAAAAACTCTGATGATAAGC
GAGACACCTTATTCAAACGAGTCAAAACGCTCACAACAGGCCTAAAACAAATAGGCTTTAACATTCGTAGCGAGTCACAA
ATCGTGGCCTTAGAATGCGGTAGCGAAAGAAACACGGAGCATGTGCGTGACTTTCTCGAAGAGCGGAATGTGTTTGGTGC
TGTATTTTGTCGCCCTGCCACGGGAAAAAACAAGAACATCATCCGATTCTCAGTGAATGCTGACATGACTTCGCAAGATA
TAGACCACGTTCTCAGGGTATGCGATGAAGCATTTCATCACCCTGAGTTAGAGTTCATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55