Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BTD91_RS09020 Genome accession   NZ_CP065150
Coordinates   2003001..2003519 (+) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio kanaloae strain R17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1998001..2008519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS09010 (BTD91_09010) gshA 2000747..2002315 (+) 1569 WP_077680851.1 glutamate--cysteine ligase -
  BTD91_RS09015 (BTD91_09015) - 2002326..2002976 (+) 651 WP_077680850.1 hypothetical protein -
  BTD91_RS09020 (BTD91_09020) luxS 2003001..2003519 (+) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  BTD91_RS09025 (BTD91_09025) - 2003632..2004903 (-) 1272 WP_077680849.1 HlyC/CorC family transporter -
  BTD91_RS09030 (BTD91_09030) - 2005032..2005826 (-) 795 WP_017056599.1 inner membrane protein YpjD -
  BTD91_RS09035 (BTD91_09035) ffh 2006027..2007412 (+) 1386 WP_077680848.1 signal recognition particle protein -
  BTD91_RS09040 (BTD91_09040) rpsP 2007624..2007872 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  BTD91_RS09045 (BTD91_09045) rimM 2007897..2008451 (+) 555 WP_017056602.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=507436 BTD91_RS09020 WP_017056597.1 2003001..2003519(+) (luxS) [Vibrio kanaloae strain R17]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=507436 BTD91_RS09020 WP_017056597.1 2003001..2003519(+) (luxS) [Vibrio kanaloae strain R17]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCAGCCGTTCGTGTCGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACTTGCGTTTTACCGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACGCTAGAGCACCTATACGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGATATCTCACCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCAGACGGATGGTTGGCTGC
AATGCAAGACGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAACGCGATCATCGCTGCAGGTATTTCTGTAAACAAGAATGATGAACTGGCA
TTGCCAGAGTCTATGCTTCAAGAGCTTAAAATTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89