Detailed information NTG0507433

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BTD91_RS08805
• Genome accession: NZ_CP065150
• Coordinates: 1957142..1958122 (+)
• Length: 326 a.a.
• NCBI ID: WP_017056583.1
• Uniprot ID: A0A4U2CIK2
• Organism: Vibrio kanaloae strain R17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1952142..1963122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTD91_RS08775 (BTD91_08775)	ispD	1952389..1953090 (+)	702	WP_046223293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BTD91_RS08780 (BTD91_08780)	ispF	1953093..1953572 (+)	480	WP_017056578.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BTD91_RS08785 (BTD91_08785)	truD	1953595..1954638 (+)	1044	WP_077680876.1	tRNA pseudouridine(13) synthase TruD	-
BTD91_RS08790 (BTD91_08790)	surE	1954723..1955466 (+)	744	WP_077680875.1	5'/3'-nucleotidase SurE	-
BTD91_RS08795 (BTD91_08795)	-	1955467..1956093 (+)	627	WP_046223296.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BTD91_RS08800 (BTD91_08800)	nlpD	1956129..1957043 (+)	915	WP_077680874.1	murein hydrolase activator NlpD	-
BTD91_RS08805 (BTD91_08805)	rpoS	1957142..1958122 (+)	981	WP_017056583.1	RNA polymerase sigma factor RpoS	Regulator
BTD91_RS08810 (BTD91_08810)	mutS	1958238..1960799 (-)	2562	WP_077680873.1	DNA mismatch repair protein MutS	-
BTD91_RS08815 (BTD91_08815)	pncC	1960924..1961418 (+)	495	WP_077680889.1	nicotinamide-nucleotide amidase	-
BTD91_RS08820 (BTD91_08820)	recA	1961558..1962175 (+)	618	Protein_1643	recombinase RecA	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37230.52 Da
• Isoelectric Point: 5.2708

>NTDB_id=507433 BTD91_RS08805 WP_017056583.1 1957142..1958122(+) (rpoS) [Vibrio kanaloae strain R17]
MSISNAVTKEEFDLVQVTTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=507433 BTD91_RS08805 WP_017056583.1 1957142..1958122(+) (rpoS) [Vibrio kanaloae strain R17]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGTCCAAGTAACCACGGAACCGGAAGCGCTTGGAAAAGC
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCCTAGATGCCACTCAACTTT
ATCTAGGCGAGATCGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATAGAAAGTAACCTGCGTTTAGTGGTAAAGATTTCACGTCGTTATAGCAATCGCGGTTT
AGCACTTCTCGATCTAATTGAAGAAGGCAACTTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAACGTGGTTTCC
GTTTTTCGACTTACGCGACATGGTGGATTCGTCAAACTATTGAACGTGCGTTGATGAATCAGACTCGGACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAGATCGCTTCTAAGCTAGATAAACCCGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATATTCTGGCTTGATGAGCTTAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGATTGCTTGGTTATGAACCGTCAACACTAGAAGAAGTTGGTCGTGAAATCAGCCTGACTCGTGAGC
GTGTTCGTCAAATTCAAGTTGAAGGTTTGCGCCGTTTACGTGAGATTCTGATCAAACAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

3D structure

• AlphaFold DB: A0A4U2CIK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834