Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I0K14_RS09720 Genome accession   NZ_CP065149
Coordinates   1904688..1904975 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain Gxun-30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899688..1909975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS09700 (I0K14_09700) - 1900862..1901059 (+) 198 WP_001048096.1 DUF4083 domain-containing protein -
  I0K14_RS09705 (I0K14_09705) - 1901091..1901552 (+) 462 WP_000035006.1 NUDIX hydrolase -
  I0K14_RS09710 (I0K14_09710) nadE 1901601..1902419 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  I0K14_RS09715 (I0K14_09715) - 1902691..1904571 (+) 1881 WP_001026021.1 FtsX-like permease family protein -
  I0K14_RS09720 (I0K14_09720) abrB 1904688..1904975 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I0K14_RS09725 (I0K14_09725) - 1905250..1906200 (+) 951 WP_001089036.1 serine protease -
  I0K14_RS09730 (I0K14_09730) - 1906240..1906548 (-) 309 WP_001259915.1 ArsR/SmtB family transcription factor -
  I0K14_RS09735 (I0K14_09735) - 1906656..1907591 (+) 936 WP_000877956.1 aldo/keto reductase -
  I0K14_RS09740 (I0K14_09740) - 1907641..1908816 (+) 1176 WP_000832291.1 MFS transporter -
  I0K14_RS09745 (I0K14_09745) - 1909003..1909227 (-) 225 WP_000162601.1 hypothetical protein -
  I0K14_RS09750 (I0K14_09750) - 1909312..1909659 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=507383 I0K14_RS09720 WP_000648330.1 1904688..1904975(+) (abrB) [Bacillus paranthracis strain Gxun-30]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=507383 I0K14_RS09720 WP_000648330.1 1904688..1904975(+) (abrB) [Bacillus paranthracis strain Gxun-30]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516