Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I0K14_RS06470 Genome accession   NZ_CP065149
Coordinates   1268105..1268428 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus paranthracis strain Gxun-30     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263105..1273428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS06445 (I0K14_06445) - 1263354..1264640 (+) 1287 WP_000247652.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I0K14_RS06450 (I0K14_06450) sipW 1264826..1265395 (+) 570 WP_000767809.1 signal peptidase I SipW -
  I0K14_RS06455 (I0K14_06455) - 1265458..1266045 (+) 588 WP_000172834.1 CalY family protein -
  I0K14_RS06460 (I0K14_06460) - 1266206..1267012 (+) 807 WP_000917715.1 DUF4047 domain-containing protein -
  I0K14_RS06465 (I0K14_06465) calY 1267436..1268029 (+) 594 WP_000053740.1 biofilm matrix protein CalY -
  I0K14_RS06470 (I0K14_06470) sinR 1268105..1268428 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  I0K14_RS06475 (I0K14_06475) - 1268508..1268642 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  I0K14_RS06480 (I0K14_06480) inhA1 1268984..1271374 (+) 2391 WP_001035919.1 M6 family metalloprotease immune inhibitor InhA1 -
  I0K14_RS06485 (I0K14_06485) - 1271546..1272913 (+) 1368 WP_000116809.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=507380 I0K14_RS06470 WP_000578880.1 1268105..1268428(-) (sinR) [Bacillus paranthracis strain Gxun-30]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=507380 I0K14_RS06470 WP_000578880.1 1268105..1268428(-) (sinR) [Bacillus paranthracis strain Gxun-30]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692