Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I0K14_RS00220 Genome accession   NZ_CP065149
Coordinates   40397..40681 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain Gxun-30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35397..45681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS00185 (I0K14_00185) tmk 35551..36177 (+) 627 WP_000677232.1 dTMP kinase -
  I0K14_RS00190 (I0K14_00190) holB 36213..37196 (+) 984 WP_000978583.1 DNA polymerase III subunit delta' -
  I0K14_RS00195 (I0K14_00195) - 37202..38029 (+) 828 WP_196240839.1 stage 0 sporulation family protein -
  I0K14_RS00200 (I0K14_00200) yabA 38044..38394 (+) 351 WP_000412054.1 DNA replication initiation control protein YabA -
  I0K14_RS00205 (I0K14_00205) - 38515..39255 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I0K14_RS00210 (I0K14_00210) - 39242..39532 (+) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  I0K14_RS00215 (I0K14_00215) rsmI 39501..40376 (+) 876 WP_000267827.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I0K14_RS00220 (I0K14_00220) abrB 40397..40681 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I0K14_RS00225 (I0K14_00225) metG 41199..43181 (+) 1983 WP_000159679.1 methionine--tRNA ligase -
  I0K14_RS00230 (I0K14_00230) - 43348..44115 (+) 768 WP_000895831.1 TatD family hydrolase -
  I0K14_RS00235 (I0K14_00235) rnmV 44332..44889 (+) 558 WP_000692832.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=507363 I0K14_RS00220 WP_000843036.1 40397..40681(-) (abrB) [Bacillus paranthracis strain Gxun-30]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=507363 I0K14_RS00220 WP_000843036.1 40397..40681(-) (abrB) [Bacillus paranthracis strain Gxun-30]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851