Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ20_RS17005 Genome accession   NZ_CP065137
Coordinates   3335472..3335756 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330472..3340756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS16985 - 3331715..3332623 (+) 909 WP_039251596.1 ketopantoate reductase family protein -
  IRJ20_RS16990 - 3332655..3333887 (-) 1233 WP_007409644.1 aminopeptidase -
  IRJ20_RS16995 - 3333988..3334122 (-) 135 WP_003154559.1 protein YkpC -
  IRJ20_RS17000 mreBH 3334194..3335201 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  IRJ20_RS17005 abrB 3335472..3335756 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRJ20_RS17010 - 3335929..3337233 (+) 1305 WP_007409646.1 ATP-binding protein -
  IRJ20_RS17015 - 3337235..3338062 (+) 828 WP_039251594.1 gamma-glutamylcyclotransferase family protein -
  IRJ20_RS17020 ktrC 3338103..3338768 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  IRJ20_RS17025 ade 3338917..3340650 (+) 1734 WP_039251592.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=507261 IRJ20_RS17005 WP_003154557.1 3335472..3335756(+) (abrB) [Bacillus sp. A1(2020)]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=507261 IRJ20_RS17005 WP_003154557.1 3335472..3335756(+) (abrB) [Bacillus sp. A1(2020)]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543