Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ20_RS16895 Genome accession   NZ_CP065137
Coordinates   3314972..3315568 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309972..3320568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS16865 - 3310184..3310639 (+) 456 WP_033574618.1 flavodoxin -
  IRJ20_RS16870 dapD 3310721..3311431 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IRJ20_RS16875 - 3311502..3312626 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  IRJ20_RS16880 - 3312687..3312932 (+) 246 WP_003154596.1 YkuS family protein -
  IRJ20_RS16885 - 3312966..3313772 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  IRJ20_RS16890 - 3314061..3314519 (+) 459 WP_015417374.1 redoxin domain-containing protein -
  IRJ20_RS16895 rok 3314972..3315568 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  IRJ20_RS16900 - 3315589..3316581 (-) 993 WP_012117448.1 hypothetical protein -
  IRJ20_RS16905 - 3316727..3317329 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  IRJ20_RS16910 - 3317381..3318400 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ20_RS16915 glp 3318418..3319710 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  IRJ20_RS16920 mobB 3319671..3320192 (+) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=507260 IRJ20_RS16895 WP_012117447.1 3314972..3315568(+) (rok) [Bacillus sp. A1(2020)]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=507260 IRJ20_RS16895 WP_012117447.1 3314972..3315568(+) (rok) [Bacillus sp. A1(2020)]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843