Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ20_RS09985 Genome accession   NZ_CP065137
Coordinates   1957469..1957759 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952469..1962759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS09945 darA 1952486..1952815 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  IRJ20_RS09950 - 1952828..1953268 (+) 441 WP_004264730.1 DUF327 family protein -
  IRJ20_RS09955 holB 1953280..1954269 (+) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  IRJ20_RS09960 ricT 1954272..1955099 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  IRJ20_RS09965 yabA 1955114..1955473 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  IRJ20_RS09970 - 1955534..1956277 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ20_RS09975 - 1956264..1956563 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  IRJ20_RS09980 rsmI 1956538..1957419 (+) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ20_RS09985 abrB 1957469..1957759 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ20_RS09990 metG 1958242..1960233 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  IRJ20_RS09995 - 1960310..1961077 (+) 768 WP_032868379.1 TatD family hydrolase -
  IRJ20_RS10000 - 1961212..1962537 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=507232 IRJ20_RS09985 WP_169510469.1 1957469..1957759(-) (abrB) [Bacillus sp. A1(2020)]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=507232 IRJ20_RS09985 WP_169510469.1 1957469..1957759(-) (abrB) [Bacillus sp. A1(2020)]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979