Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SANR_RS02410 Genome accession   NC_022239
Coordinates   469068..469778 (-) Length   236 a.a.
NCBI ID   WP_020999496.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 464068..474778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS02395 (SANR_0469) - 464455..465579 (+) 1125 WP_003033878.1 AI-2E family transporter -
  SANR_RS02400 (SANR_0470) - 465803..467452 (+) 1650 WP_020999495.1 phosphoenolpyruvate carboxykinase (ATP) -
  SANR_RS02405 (SANR_0471) - 467569..468909 (+) 1341 WP_003033925.1 hemolysin family protein -
  SANR_RS02410 (SANR_0472) treR 469068..469778 (-) 711 WP_020999496.1 trehalose operon repressor Regulator
  SANR_RS12225 - 469958..470398 (+) 441 WP_411198023.1 glucose PTS transporter subunit EIIB -
  SANR_RS02415 (SANR_0473) - 470322..471971 (+) 1650 WP_412093890.1 glucose PTS transporter subunit IIA -
  SANR_RS02420 (SANR_0474) treC 472177..473808 (+) 1632 WP_003033969.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27638.72 Da        Isoelectric Point: 9.2637

>NTDB_id=50720 SANR_RS02410 WP_020999496.1 469068..469778(-) (treR) [Streptococcus anginosus C238]
MKKYEQIFKLLEQDILNEKYQMNDYLPSEHELVQAYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSILTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=50720 SANR_RS02410 WP_020999496.1 469068..469778(-) (treR) [Streptococcus anginosus C238]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATGAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGGCCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCATTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACTAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCAAAAGTCTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTCTCCAAACGGCAAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.407

100

0.644