Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ20_RS02220 Genome accession   NZ_CP065137
Coordinates   426692..427459 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. A1(2020)     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 421692..432459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS02200 - 421894..422706 (-) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -
  IRJ20_RS02205 ccpN 422732..423370 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  IRJ20_RS02210 glyS 423471..425510 (-) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  IRJ20_RS02215 glyQ 425503..426390 (-) 888 WP_040237913.1 glycine--tRNA ligase subunit alpha -
  IRJ20_RS02220 recO 426692..427459 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  IRJ20_RS02225 - 427496..427639 (-) 144 WP_007408286.1 YqzL family protein -
  IRJ20_RS02230 era 427795..428700 (-) 906 WP_007408285.1 GTPase Era -
  IRJ20_RS02235 - 428681..429091 (-) 411 WP_003152976.1 cytidine deaminase -
  IRJ20_RS02240 - 429215..429589 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  IRJ20_RS02245 ybeY 429570..430043 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  IRJ20_RS02250 - 430044..432176 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=507199 IRJ20_RS02220 WP_007408287.1 426692..427459(-) (recO) [Bacillus sp. A1(2020)]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=507199 IRJ20_RS02220 WP_007408287.1 426692..427459(-) (recO) [Bacillus sp. A1(2020)]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89