Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I2T83_RS16350 Genome accession   NZ_CP065136
Coordinates   3342352..3342981 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EE72d     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3337352..3347981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2T83_RS16335 (I2T83_16335) helD 3337594..3339648 (-) 2055 WP_020232990.1 DNA helicase IV -
  I2T83_RS16340 (I2T83_16340) yccF 3339771..3340217 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I2T83_RS16345 (I2T83_16345) yccS 3340227..3342389 (+) 2163 WP_000875041.1 YccS family putative transporter -
  I2T83_RS16350 (I2T83_16350) sxy/tfoX 3342352..3342981 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I2T83_RS16355 (I2T83_16355) sulA 3343200..3343709 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I2T83_RS16360 (I2T83_16360) ompA 3344066..3345118 (+) 1053 WP_000750418.1 porin OmpA -
  I2T83_RS16365 (I2T83_16365) matP 3345193..3345645 (-) 453 WP_119163918.1 macrodomain Ter protein MatP -
  I2T83_RS16370 (I2T83_16370) ycbZ 3345831..3347591 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=507180 I2T83_RS16350 WP_000839153.1 3342352..3342981(-) (sxy/tfoX) [Escherichia coli strain EE72d]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=507180 I2T83_RS16350 WP_000839153.1 3342352..3342981(-) (sxy/tfoX) [Escherichia coli strain EE72d]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1