Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VB13_RS06355 Genome accession   NZ_CP077685
Coordinates   1276620..1277228 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain M49 591     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271620..1282228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS06325 (VB13_06520) - 1271865..1272347 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  VB13_RS06330 (VB13_06525) - 1272494..1273963 (-) 1470 WP_012560860.1 cell division site-positioning protein MapZ family protein -
  VB13_RS06335 (VB13_06530) - 1273977..1275131 (-) 1155 WP_012560861.1 class I SAM-dependent RNA methyltransferase -
  VB13_RS06345 (VB13_06545) gpsB 1275576..1275902 (-) 327 WP_219050262.1 cell division regulator GpsB -
  VB13_RS06350 (VB13_06550) - 1276030..1276539 (-) 510 WP_009880658.1 DUF1273 domain-containing protein -
  VB13_RS06355 (VB13_06555) recU 1276620..1277228 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  VB13_RS06360 (VB13_06560) pbp1a 1277215..1279380 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  VB13_RS06365 (VB13_06565) pepC 1279847..1281184 (-) 1338 WP_002983616.1 aminopeptidase C -
  VB13_RS06370 (VB13_06570) nadE 1281369..1282193 (-) 825 WP_043885073.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=506888 VB13_RS06355 WP_002983622.1 1276620..1277228(+) (recU) [Streptococcus pyogenes strain M49 591]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=506888 VB13_RS06355 WP_002983622.1 1276620..1277228(+) (recU) [Streptococcus pyogenes strain M49 591]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5