Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SANR_RS00210 Genome accession   NC_022239
Coordinates   28839..29612 (+) Length   257 a.a.
NCBI ID   WP_020999415.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23839..34612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS00190 (SANR_0039) mreD 24585..25085 (+) 501 WP_003037058.1 rod shape-determining protein MreD -
  SANR_RS00195 (SANR_0040) pcsB 25195..26418 (+) 1224 WP_003036998.1 peptidoglycan hydrolase PcsB -
  SANR_RS00200 (SANR_0041) - 26551..27519 (+) 969 WP_003037009.1 ribose-phosphate diphosphokinase -
  SANR_RS00205 (SANR_0042) - 27674..28861 (+) 1188 WP_003036950.1 pyridoxal phosphate-dependent aminotransferase -
  SANR_RS00210 (SANR_0043) recO 28839..29612 (+) 774 WP_020999415.1 DNA repair protein RecO Machinery gene
  SANR_RS00215 (SANR_0044) plsX 29609..30607 (+) 999 WP_020999416.1 phosphate acyltransferase PlsX -
  SANR_RS00220 (SANR_0045) - 30604..30849 (+) 246 WP_003027168.1 acyl carrier protein -
  SANR_RS00225 (SANR_0046) purC 31007..31714 (+) 708 WP_020999417.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30025.38 Da        Isoelectric Point: 5.3725

>NTDB_id=50685 SANR_RS00210 WP_020999415.1 28839..29612(+) (recO) [Streptococcus anginosus C238]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFAMAYATYVVALADTSIQDNEIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVG
LPFDFSFTYNGVLCPEHYGKDERRSHLDPNIPYLLDQFQAVQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLEDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=50685 SANR_RS00210 WP_020999415.1 28839..29612(+) (recO) [Streptococcus anginosus C238]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTCCTCTATAATCGTAATTTCCGAGAAAATGATAAGCTGGTCAAAATTTT
CACAGAGCAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCAGTTATCCAACCATTGG
TAGTGGCAGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATTAATCATGATTTGTTTGCAATGGCTTATGCGACTTATGTGGTAGCTCTGGCAGACACCAGTATTCAGGATAATGA
AATAGATTCGGCGCTCTTTGCTTTTTTGCAAAAAACATTAGAATTGATGGAGCAGGGCTTGGATTATGAGGTACTAACTA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGGATTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGTGTAGGG
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCCCTGAGCATTATGGAAAAGATGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGGTTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATTTAAAGCCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATTTTAAAAAACAAGGAGTCAAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747