Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KQY30_RS24745 Genome accession   NZ_CP077658
Coordinates   5858841..5860574 (-) Length   577 a.a.
NCBI ID   WP_217308707.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5853841..5865574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS24735 (KQY30_24735) - 5855605..5856780 (+) 1176 WP_217311305.1 RNA polymerase sigma factor -
  KQY30_RS24740 (KQY30_24740) rcrQ 5856913..5858841 (-) 1929 WP_217308706.1 ABC transporter ATP-binding protein Regulator
  KQY30_RS24745 (KQY30_24745) rcrP 5858841..5860574 (-) 1734 WP_217308707.1 ABC transporter ATP-binding protein Regulator
  KQY30_RS24750 (KQY30_24750) - 5860950..5862389 (-) 1440 WP_217308708.1 FGGY family carbohydrate kinase -
  KQY30_RS24755 (KQY30_24755) - 5862525..5862824 (-) 300 WP_046505919.1 hypothetical protein -
  KQY30_RS24775 (KQY30_24775) - 5863500..5865071 (-) 1572 WP_217311306.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62698.94 Da        Isoelectric Point: 6.9103

>NTDB_id=506802 KQY30_RS24745 WP_217308707.1 5858841..5860574(-) (rcrP) [Streptomyces sp. GMY02]
MLLRLLRAHLAPYKRPIALLVALQLLQTCATLYLPTLNADIIDSGVVKGDSGYILKFGGIMIAVSVVQVLCNIGAVYYGA
RTASALGRDVRAAIFGRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIIMALGQDVPLSVV
LLAVVPLLAVSVGLIVKRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFREANTGLTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PENPVRELRRHGHLEVRNAEFRFPGAEEPVLRDVSLIARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGQVLVDGQDVR
EIDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQARDFVTGLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVLIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMAEN
TTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=506802 KQY30_RS24745 WP_217308707.1 5858841..5860574(-) (rcrP) [Streptomyces sp. GMY02]
GTGCTGCTACGACTTCTGCGAGCCCATCTCGCCCCGTACAAAAGACCCATAGCCCTGCTGGTGGCGCTCCAGCTTCTGCA
GACCTGCGCCACCCTCTATCTGCCCACTCTCAACGCCGACATCATCGACAGCGGTGTGGTGAAGGGTGATTCCGGTTACA
TCCTGAAGTTCGGCGGCATCATGATCGCCGTCAGTGTGGTCCAGGTGCTCTGCAACATCGGCGCCGTCTACTACGGCGCG
CGGACCGCCTCGGCCCTCGGCCGGGACGTACGGGCCGCCATCTTCGGGCGCGTACAGAGCTTCTCCGCGCGTGAGGTGGG
TCACTTCGGTGCCCCGTCGCTGATCACCCGTACCACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCCATCATGTGTGTCGGTGGCATCATCATGGCGCTCGGCCAGGACGTACCGCTCTCCGTGGTG
CTGCTCGCCGTCGTCCCGCTGCTCGCCGTCTCCGTCGGCCTCATCGTCAAGAGGATGCGGCCGCTGTTCCGTACGATGCA
GACCCGTCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGAAACCGCGTGATCAGGGCGTTCGTACGCGACG
AGTACGAGAAGGACCGTTTCCGCGAGGCCAACACCGGGCTGACCGATGTCGCCCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGGACACCAGGTCGAGCGTCGTACCG
CCGGAGAACCCGGTACGGGAGCTTCGCCGGCACGGTCACCTGGAGGTTCGGAACGCGGAGTTCCGGTTCCCCGGTGCCGA
GGAGCCCGTTCTGCGGGACGTGTCCCTGATCGCCAGGCCCGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGTGGCA
AGTCGACACTTCTCGGCCTCGTACCACGGCTGTTCGACGCCACCGGCGGACAGGTGCTGGTCGACGGGCAGGACGTACGG
GAAATCGATCCCGTACTGCTGGCGAAGACCGTGAGCCTGGTGCCGCAGAAGCCGTATCTCTTCTCCGGGACGGTCGCGAC
CAATCTGCGGTACGGCAATCCCGACGCGACCGACGAGGAGCTGTGGCACGCCCTGGACGTGGCGCAGGCGCGGGACTTTG
TCACCGGTCTGGAGGGCGGGCTGAACGCGCCCATCGCGCAGGGCGGTACGAATGTCTCGGGCGGCCAGCGGCAGCGCCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGGCGCGGGAGACCGCGGAGGCGACCGTACTGATCGTCGCCCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCGTGGTCCTGGACGAGGGCCGGGTCGTCGGAGCGGGCCGCCATCACGAACTGATGGCGGAGAAC
ACGACATACCGGGAGATCGTGCTCTCCCAGTTGACCGAGGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.559

99.133

0.402