Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KQY30_RS24740 Genome accession   NZ_CP077658
Coordinates   5856913..5858841 (-) Length   642 a.a.
NCBI ID   WP_217308706.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5851913..5863841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS24730 (KQY30_24730) dnaG 5853156..5855108 (+) 1953 WP_217308705.1 DNA primase -
  KQY30_RS24735 (KQY30_24735) - 5855605..5856780 (+) 1176 WP_217311305.1 RNA polymerase sigma factor -
  KQY30_RS24740 (KQY30_24740) rcrQ 5856913..5858841 (-) 1929 WP_217308706.1 ABC transporter ATP-binding protein Regulator
  KQY30_RS24745 (KQY30_24745) rcrP 5858841..5860574 (-) 1734 WP_217308707.1 ABC transporter ATP-binding protein Regulator
  KQY30_RS24750 (KQY30_24750) - 5860950..5862389 (-) 1440 WP_217308708.1 FGGY family carbohydrate kinase -
  KQY30_RS24755 (KQY30_24755) - 5862525..5862824 (-) 300 WP_046505919.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69976.56 Da        Isoelectric Point: 5.1230

>NTDB_id=506801 KQY30_RS24740 WP_217308706.1 5856913..5858841(-) (rcrQ) [Streptomyces sp. GMY02]
MSGPGGRMMMAAGPTQRSMDFKGSGKRLLRQLTRERVTLWWMFGTIVLSVALSVVGPKILGRATDLIFAGVIGRQTPAGV
SKAETVEGLRAKGDDGLADLLSGVDFTPGHGIDFGAVGEVLLVVLVIYVAAGLLMLVSTRLSIRIINNTVYRMREDVQAK
LSRLPLSYFDQQPRGEVLSRVTNDVDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKVGK
RSQPQFVQQWKVTGTLNAHIEEMYTGHALVKVFGRQDESAELFREQNDQLYEAGFKAQFNSGIMQPLMLFISNINYVLIA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAVEQEPDAPSVERLRKQRGRVEIE
HLSFRYEPEKPLIDDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDDMDISRISRAELRSGIGMVLQDT
WLFGGTIAENIAYGAAREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=506801 KQY30_RS24740 WP_217308706.1 5856913..5858841(-) (rcrQ) [Streptomyces sp. GMY02]
ATGAGCGGTCCTGGCGGACGCATGATGATGGCCGCGGGCCCGACCCAGCGGTCCATGGACTTCAAGGGCTCCGGAAAGCG
GCTGCTGCGGCAGCTCACCCGGGAGCGGGTCACCCTCTGGTGGATGTTCGGCACGATCGTGCTGAGCGTGGCGCTGTCGG
TGGTGGGCCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGCGGGGGTGATCGGCCGGCAGACCCCGGCAGGCGTC
TCCAAGGCGGAGACCGTCGAGGGGCTGCGGGCGAAGGGCGACGACGGACTGGCCGATCTGCTGTCGGGGGTGGACTTCAC
CCCCGGCCACGGCATCGACTTCGGCGCGGTCGGCGAGGTGCTGCTGGTGGTCCTGGTGATCTATGTGGCGGCCGGGCTGC
TGATGCTGGTGTCGACGCGGCTCTCCATCCGGATCATCAACAACACGGTGTACCGGATGCGCGAGGACGTCCAGGCGAAG
CTTTCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGCCGCGCGGCGAGGTGCTCAGCCGTGTGACCAACGATGTCGACAA
CATCTCGCAGACCATGCAGCAGACCATGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGTGTGCTGGTGATGATGT
TCTGGATCTCGCCCCTGCTGGCGCTGGTCGCACTGGTGACCGTACCGCTGTCGGTGTTCGTCGCGGCGAAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCACGCTCAACGCCCATATCGAGGAGATGTACACCGGCCA
CGCGCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCCGAGCTGTTCCGCGAGCAGAACGACCAGCTCTACGAGGCGG
GTTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTCTTCATCTCCAACATCAACTATGTGCTGATCGCG
GTCGTGGGCGGGCTGCGGGTCGCGTCCGGCACGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTATTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGAGTCGCTTCCGCCGAGCGGATCTTCGAGT
TGCTGGACGCGGTGGAGCAGGAGCCCGACGCGCCGTCCGTCGAGCGGCTGCGCAAGCAGCGGGGACGGGTGGAGATCGAG
CACCTCTCGTTCCGGTACGAGCCGGAAAAGCCGCTGATCGACGATCTGTCGCTGTCGGTGGAGCCGGGCCAGACGGTCGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCCGGA
TCACCCTGGACGACATGGACATATCCAGGATCTCGCGCGCCGAACTGCGGTCCGGGATAGGCATGGTGCTCCAGGACACC
TGGCTCTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGGCGCGCGAGGTCACCCGGGAAGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCCGACCGGTTCGTCCGTACGCTCCCCGACGGGTACGACACGGTGATCGACGACGAGGGCTCGG
GGGTCAGCGCCGGCGAGAAGCAACTGATAACCATCGCGCGGGCGTTCCTGTCCGACCCCGTGATCCTGGTGCTCGACGAG
GCGACCAGTTCGGTGGACACCCGTACCGAAGTACTGATCCAGAAGGCGATGGCGCGGCTGGCGCACGGCAGGACCAGCTT
TGTGATCGCGCACCGGCTGTCCACGATCCGGGACGCGGATGTGATTCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCATGACGAGCTGCTGGCGGCGGAGGGTGCGTACGCGCGCCTGTACGCGGCGCAATTCGCGCAGGCGGTGGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388