Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KQY30_RS08390 Genome accession   NZ_CP077658
Coordinates   2023148..2023933 (+) Length   261 a.a.
NCBI ID   WP_217306300.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018148..2028933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS08375 (KQY30_08375) - 2018236..2018937 (+) 702 WP_217310883.1 2-phosphosulfolactate phosphatase -
  KQY30_RS08380 (KQY30_08380) - 2019093..2021999 (-) 2907 WP_217306298.1 vitamin B12-dependent ribonucleotide reductase -
  KQY30_RS08385 (KQY30_08385) nrdR 2022142..2022648 (-) 507 WP_217306299.1 transcriptional regulator NrdR -
  KQY30_RS08390 (KQY30_08390) dinR/lexA 2023148..2023933 (+) 786 WP_217306300.1 transcriptional repressor LexA Regulator
  KQY30_RS08395 (KQY30_08395) - 2024092..2026062 (-) 1971 WP_217306301.1 ATP-dependent DNA helicase -
  KQY30_RS08400 (KQY30_08400) - 2026102..2027886 (-) 1785 WP_254407554.1 IucA/IucC family siderophore biosynthesis protein -
  KQY30_RS08405 (KQY30_08405) - 2028110..2028850 (-) 741 WP_217306303.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28321.15 Da        Isoelectric Point: 7.4239

>NTDB_id=506762 KQY30_RS08390 WP_217306300.1 2023148..2023933(+) (dinR/lexA) [Streptomyces sp. GMY02]
MTTTADSATITAQDRSQSRLEPVHAMNDGIMNPEGPKPGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNVAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=506762 KQY30_RS08390 WP_217306300.1 2023148..2023933(+) (dinR/lexA) [Streptomyces sp. GMY02]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGGGATCATGAATCCGGAGGGGCCCAAGCCCGGCCGTTCGCTGCCCGGCCGACCTCCAGGAATCAGGGCGGACAGCT
CGGGTCTCACCGACCGGCAGCGCAGGGTCATCGAAGTCATCCGGGACTCCGTGCAGCGGCGTGGGTACCCGCCTTCGATG
CGGGAGATCGGCCAAGCCGTGGGGCTCTCCAGCACCTCGTCGGTCGCCCATCAGCTCATGGCCCTGGAGCGCAAGGGCTT
CCTGCGCCGCGACCCGCACCGGCCCAGGGCCTATGAGGTGCGCGGCTCGGACCAGCCGAGCACCCAGCCGACGGACACGA
CCGGCAAGCCCGCCGCGTCCTATGTCCCGCTGGTCGGCCGGATCGCCGCCGGCGGACCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTCCCCCGCCAGTTGGTCGGTGACGGAGAGCTGTTCGTTCTCAAGGTCGTCGGTGACTCGATGAT
CGAAGCCGCGATCTGCGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGGGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCGACGGTCAAGCGCTTCCGCCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAATGTGGCGTAT
CAACCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTCGCGGTCCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375