Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KRR37_RS31175 Genome accession   NZ_CP077652
Coordinates   7113487..7115940 (-) Length   817 a.a.
NCBI ID   WP_248871970.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7108487..7120940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS31155 (KRR37_30920) - 7109037..7109933 (-) 897 WP_127469325.1 LysR substrate-binding domain-containing protein -
  KRR37_RS31160 (KRR37_30925) - 7110065..7110733 (+) 669 WP_248872402.1 succinate dehydrogenase -
  KRR37_RS31165 (KRR37_30930) - 7110735..7112684 (+) 1950 WP_248871968.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  KRR37_RS31170 (KRR37_30935) - 7112681..7113427 (+) 747 WP_019766846.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  KRR37_RS31175 (KRR37_30940) uvrA 7113487..7115940 (-) 2454 WP_248871970.1 excinuclease ABC subunit UvrA Machinery gene
  KRR37_RS31180 (KRR37_30945) - 7115981..7117204 (-) 1224 WP_248871972.1 MFS transporter -
  KRR37_RS31185 (KRR37_30950) - 7117261..7117830 (+) 570 WP_248871974.1 CGNR zinc finger domain-containing protein -
  KRR37_RS31190 (KRR37_30955) - 7117866..7118876 (-) 1011 WP_248871975.1 MsnO8 family LLM class oxidoreductase -
  KRR37_RS31195 (KRR37_30960) - 7119012..7119500 (+) 489 WP_127469319.1 hypothetical protein -
  KRR37_RS31200 (KRR37_30965) - 7119512..7119727 (-) 216 WP_019766825.1 dodecin -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 86868.96 Da        Isoelectric Point: 6.5433

>NTDB_id=506749 KRR37_RS31175 WP_248871970.1 7113487..7115940(-) (uvrA) [Streptomyces sp. HNA39]
MHSPHDPYVRVRGAREHNLQDVNVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPPGAEPLDSDAFSPNTAAGACPECHGLGRIHRTDEGR
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELDAKDREWILFTDEQPVVTVHPVREAGRIQRPYQGTY
MSARRYVLHTFADTKSRTLRAKAERFLTSVPCPVCGGSRLRPEAMAVTFGGRTIAELAALPLSDLAEVLAGAHGGAHGGG
AGAEPAGGEETARVLGADLLARIGTVTELGLGYLSLDRTAPTLSSGELQRLRMATQLRSGLFGVVYVLDEPSAGLHPADT
ESLLGVVDRLKEAGNSVFVVEHHLDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAEVPESATRRFLFDRDPAPAREPR
TPTGWIRLAGVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLSGVLADRQAGEEATGAVERCCASVTGVEAVDRL
VQVDQKPIGRTPRSNLATYTGLFDTVRKLFAQTGTARERGYTAGRFSFNVRGGRCETCQGEGFVSVELLFLPSTYAPCPD
CHGARYNPETLEITLHGLTIAQVLDLTVESAASFFADTPGAERALTTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQ
RTRRGHTLYLLDEPTTGLHPADVEVLTRQLHGLVDAGSTVVVVEHDMAVVAGADHVIDLGPGGGDRGGRIVAAGAPREVA
RAADSRTAPYLARALGG

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=506749 KRR37_RS31175 WP_248871970.1 7113487..7115940(-) (uvrA) [Streptomyces sp. HNA39]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGCGGCGCGCGCGAGCACAACCTCCAGGACGTGAACGTCGACATCCC
GCGCGACACCCTGACGGTCTTCACCGGGGTCTCCGGGTCCGGCAAGTCGTCGCTGGCGTTCGGCACGATCTACGCCGAGG
CCCAGCGCCGCTACTTCGAGTCCGTCGCCCCCTACGCCCGCCGGCTCATCCACCAGGTGGGCGCCCCCGCCGTCGGGGAG
ATCACCGGGCTGCCGCCCGCCGTATCGCTGGAGCAGCGGCGCTCCGCCCCCGGGGCCCGGTCGTCCGTGGGAACGGTGAC
CACGCTCTCCAACTCACTGCGGATGCTGTTCTCCCGGGCCGGGGAGTATCCGCCGGGGGCCGAGCCACTGGACTCCGACG
CCTTCTCCCCCAACACGGCGGCCGGGGCCTGCCCCGAGTGCCACGGGCTCGGGCGCATCCACCGTACGGACGAAGGGCGG
CTGGTCCCCGACCCCTCGCTGTCGATCCGGGAGGGGGCGATCGCGGCCTGGCCGGGCGCATGGCAGGGGAAGAACCTGCG
CGATGTGCTCGACACCCTCGGGTACGACGTCGACCGGCCGTGGCGCGAGCTGGACGCGAAGGACCGGGAGTGGATCCTGT
TCACCGACGAGCAGCCGGTGGTGACGGTGCATCCGGTACGGGAGGCGGGCCGCATCCAACGCCCGTACCAGGGAACGTAC
ATGAGCGCGCGGCGCTATGTGCTGCACACCTTCGCCGATACCAAGAGCCGCACCCTGCGGGCGAAGGCCGAGCGCTTCCT
CACCAGTGTGCCGTGCCCGGTCTGCGGCGGGAGCAGGCTGCGTCCGGAGGCGATGGCGGTGACCTTCGGCGGGCGGACCA
TCGCGGAGCTGGCCGCACTCCCCCTGTCGGACCTGGCCGAGGTGCTGGCCGGGGCCCACGGCGGGGCGCACGGCGGCGGG
GCGGGGGCCGAGCCTGCGGGCGGGGAGGAGACGGCCCGGGTGCTGGGCGCCGACCTGCTGGCCCGGATCGGAACGGTGAC
CGAACTCGGGCTCGGCTATCTGAGCCTGGACCGCACGGCCCCCACCCTCTCCTCCGGCGAGCTCCAACGGCTGCGGATGG
CCACGCAGTTGCGCTCCGGGCTCTTCGGTGTCGTCTACGTCCTGGACGAACCGTCGGCCGGGCTGCACCCCGCCGATACG
GAGTCCCTGCTCGGGGTGGTCGACCGGCTCAAGGAGGCAGGAAACTCCGTCTTCGTCGTGGAGCACCACCTCGATGTGGT
GCGGCGGGCGGACTGGCTCGTGGACGTGGGCCCGCTGGCCGGGGAGCACGGCGGGCGGGTGCTGCACAGCGGGCCGCCGG
AGGGGCTGGCCGAGGTGCCGGAGTCCGCGACGCGGCGGTTCCTGTTCGACCGGGACCCCGCGCCGGCACGGGAGCCACGC
ACGCCCACGGGGTGGATCCGGCTCGCCGGGGTCGAGCGCCACAATGTGCGCGGGGTCGACGCGGCCTTCCCGCTCGGGGT
CTTCACGGCGGTGACCGGGGTCTCGGGCTCGGGCAAGTCGACCCTCGTCGGCCAGGTCCTCTCCGGGGTGCTGGCCGACC
GGCAGGCGGGCGAGGAGGCCACCGGGGCGGTCGAGCGGTGCTGCGCTTCCGTCACCGGGGTGGAGGCGGTGGACCGGCTC
GTCCAGGTGGACCAGAAGCCGATCGGCCGGACGCCCCGGTCCAACCTGGCCACGTACACCGGCCTCTTCGACACCGTACG
GAAGCTGTTCGCGCAGACCGGGACGGCACGTGAACGCGGATACACGGCGGGGCGGTTCTCGTTCAACGTACGCGGCGGGC
GGTGCGAGACCTGCCAGGGCGAGGGGTTCGTCTCGGTGGAGCTGCTCTTCCTGCCGAGCACGTATGCCCCCTGCCCGGAC
TGCCATGGCGCCCGCTACAACCCGGAGACTCTGGAAATCACCTTGCATGGGCTGACGATCGCTCAAGTCCTCGACCTGAC
CGTGGAGTCGGCCGCTTCCTTCTTCGCCGACACCCCGGGCGCCGAGCGCGCTCTGACCACCCTGCTCGATGTCGGGCTCG
GCTATCTGCGGCTCGGGCAGCCCGCCACCGAGCTGTCCGGCGGCGAGGCGCAGCGGATCAAGCTGGCGTCGGAGCTGCAG
CGCACCCGGCGCGGACACACCCTGTATCTGCTGGACGAGCCCACGACCGGTCTGCATCCGGCCGATGTGGAGGTGCTGAC
GCGGCAGTTGCACGGGCTGGTCGACGCGGGGAGCACGGTGGTGGTCGTGGAGCACGACATGGCCGTGGTCGCGGGGGCGG
ACCATGTGATCGACCTGGGGCCCGGGGGTGGTGACCGGGGCGGGCGGATCGTGGCGGCCGGGGCGCCCCGGGAGGTGGCG
CGTGCGGCGGACAGCCGTACGGCCCCGTATCTGGCGCGTGCGCTGGGCGGTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(498-735)

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.621

89.106

0.371
  uvrA Streptococcus pneumoniae TIGR4

41.621

89.106

0.371
  uvrA Streptococcus pneumoniae D39

41.621

89.106

0.371