Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KRR37_RS29825 Genome accession   NZ_CP077652
Coordinates   6741128..6743413 (-) Length   761 a.a.
NCBI ID   WP_248871802.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6736128..6748413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS29815 (KRR37_29605) - 6736536..6739916 (+) 3381 WP_248871801.1 hypothetical protein -
  KRR37_RS29820 (KRR37_29610) - 6739993..6740967 (-) 975 WP_127465238.1 acyl-ACP desaturase -
  KRR37_RS29825 (KRR37_29615) uvrA 6741128..6743413 (-) 2286 WP_248871802.1 excinuclease ABC subunit UvrA Machinery gene
  KRR37_RS29830 (KRR37_29620) - 6743508..6745139 (-) 1632 WP_248871803.1 ATP-binding cassette domain-containing protein -
  KRR37_RS29835 (KRR37_29625) - 6745400..6745816 (-) 417 WP_127465235.1 SsgA family sporulation/cell division regulator -
  KRR37_RS29840 (KRR37_29630) - 6746068..6746370 (-) 303 WP_127465234.1 YciI family protein -
  KRR37_RS29845 (KRR37_29635) - 6746424..6747116 (+) 693 WP_127465233.1 endonuclease V -
  KRR37_RS29850 (KRR37_29640) - 6747141..6747728 (-) 588 WP_127465232.1 hypothetical protein -
  KRR37_RS29855 (KRR37_29645) - 6747855..6748001 (+) 147 WP_248871804.1 hypothetical protein -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 81763.49 Da        Isoelectric Point: 6.1478

>NTDB_id=506748 KRR37_RS29825 WP_248871802.1 6741128..6743413(-) (uvrA) [Streptomyces sp. HNA39]
MDHSTDRSITITGAHENNLRDVSLTLPKGRITVFTGVSGSGKSSVVFDTIAVESQRQLNETFTSFLRNRLPKYERPRAES
MENLSVAVVIDQKPLGGNVRSTVGTATDIWSVLRVLFSRYGTPSAGGATAYSFNDPAGMCPECDGVGHVVRLDLDRAVDW
SKSLNEGALLLPGLGVGSWEWSLYGGSGRFDNDLPLREFSEGDRQLLLYGSGFTVQVDMRTGSAEMRFEGVVTRFERLYL
KRDTASLSEKRRAAADRFTVERVCGSCDGARLNAAALATRVDGLSPADYGRMEVSELVGVLARVDDPVGGPIAAAARERL
ERLAGIGLGYLSLDRQTSTLSGGEGQRLKMVRHLGSSLTGLTFVLDEPSVGLHPRDVGRLGDLLVRLRDKGNTVLVVEHD
PDVMAVADHIVDMGPRAGSEGGHVVFEGPFDRLRASDTLTGRSLRRRTPLKSEFRSPTGRLPVQGADLHNLKGLDVSFPA
GVLTVVTGVAGSGKSTLVSEVFTAAHPEAVVIDQSAITASSRSTPASYIGALDTIRKVFARENGVDAGLFSFNSAGACPG
CAGRGEISTDLAFMDPVTTTCRECEGRRFHDDVLKHRVGGRSIVDVLEMTAAQAVDLFEDRALLRKLRTLDEVGLTYLTL
GQPLSTLSGGERQRIKLATQLHRTSSVYVLDEPTTGLHLADTGALVDLLDRLVDAGNTVVCVEHNLEVVKRADWVIDLGP
DGGKKGGELVFAGTPEGLLADRISVTAEYLRRDLGLPAEPR

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=506748 KRR37_RS29825 WP_248871802.1 6741128..6743413(-) (uvrA) [Streptomyces sp. HNA39]
ATGGATCACAGCACCGACCGCTCCATCACCATCACCGGAGCGCACGAGAACAATCTGCGCGATGTCTCCCTCACCCTGCC
CAAGGGCCGGATCACCGTCTTCACGGGGGTGTCCGGCTCGGGGAAGTCGTCGGTCGTCTTCGACACGATCGCCGTGGAGT
CCCAGCGGCAGCTGAACGAGACCTTCACCTCGTTCCTGCGCAACCGGCTGCCGAAGTACGAGCGGCCACGGGCGGAGTCC
ATGGAGAACCTGTCCGTGGCCGTCGTCATCGACCAGAAGCCGCTGGGCGGCAACGTCCGCTCGACCGTGGGCACGGCGAC
GGACATCTGGTCGGTACTCCGGGTGCTGTTCTCCCGCTACGGCACCCCGAGCGCGGGCGGGGCCACCGCGTACTCCTTCA
ACGACCCGGCGGGGATGTGCCCGGAGTGCGACGGGGTCGGGCATGTGGTCCGGCTCGATCTGGACCGGGCGGTGGACTGG
TCGAAGTCGCTGAACGAGGGGGCGCTGCTGCTGCCCGGGCTGGGGGTGGGAAGCTGGGAGTGGAGCCTGTACGGCGGGTC
GGGGCGGTTCGACAACGACCTGCCGCTGCGGGAGTTCAGCGAGGGGGACCGGCAACTCCTGCTGTACGGCTCCGGGTTCA
CCGTCCAGGTCGACATGCGGACGGGTTCGGCGGAGATGCGGTTCGAGGGAGTGGTGACCCGGTTCGAGCGGCTCTACCTC
AAGCGGGACACGGCATCGCTGTCGGAGAAGCGGCGCGCGGCGGCCGACCGGTTCACCGTCGAGCGGGTCTGCGGCTCCTG
CGACGGGGCGCGGCTGAACGCGGCGGCGCTCGCCACCCGGGTCGACGGGCTCTCGCCGGCCGACTACGGGCGGATGGAGG
TCTCCGAGCTGGTCGGCGTGCTGGCGCGGGTCGACGATCCGGTGGGCGGTCCGATCGCGGCGGCGGCCCGTGAGCGGCTG
GAGCGGCTCGCGGGGATCGGGCTCGGCTATCTCAGCCTGGACCGGCAGACAAGCACCCTGTCGGGCGGTGAGGGTCAGCG
CCTCAAGATGGTCCGCCACCTGGGGAGTTCACTGACCGGGCTGACCTTCGTCCTCGACGAGCCGAGCGTGGGGCTGCACC
CCCGGGACGTCGGGCGGCTCGGTGATCTGCTGGTGCGGCTGCGCGACAAGGGCAACACCGTGCTGGTGGTCGAGCACGAC
CCTGATGTGATGGCGGTGGCGGACCACATCGTCGACATGGGTCCGCGGGCGGGTTCGGAGGGCGGACACGTCGTCTTCGA
GGGGCCGTTCGACCGGCTGCGCGCGTCGGACACGCTCACCGGCCGGTCGCTGCGCCGACGCACCCCGCTCAAGAGCGAGT
TCCGCTCCCCCACCGGCCGGCTCCCGGTCCAGGGTGCCGATCTGCACAACCTCAAGGGGCTGGACGTGTCGTTCCCGGCC
GGGGTGCTGACCGTGGTGACCGGGGTCGCGGGTTCGGGCAAGTCGACGCTGGTGTCGGAGGTGTTCACGGCGGCCCACCC
CGAGGCGGTGGTCATCGACCAGAGCGCGATCACCGCCTCGTCCCGCTCGACCCCGGCCTCGTACATCGGCGCACTGGACA
CCATCCGCAAGGTCTTCGCCCGCGAGAACGGTGTCGACGCCGGGCTGTTCAGCTTCAACTCCGCCGGGGCGTGCCCGGGT
TGTGCGGGGCGCGGGGAGATCTCCACCGACCTGGCGTTCATGGACCCGGTCACCACGACCTGCCGGGAGTGCGAGGGGCG
CCGGTTCCACGACGACGTGCTGAAGCACCGGGTCGGCGGCCGGTCCATCGTCGACGTCCTGGAGATGACGGCGGCGCAGG
CGGTCGACCTCTTCGAGGACCGGGCGCTGCTGCGGAAACTGCGGACGCTCGACGAGGTCGGGCTCACCTACCTCACGCTC
GGCCAGCCGCTCAGCACGCTCTCCGGCGGCGAGCGCCAGCGGATCAAGCTGGCCACCCAGCTCCACCGCACCTCCAGCGT
GTACGTCCTGGACGAGCCGACGACCGGGCTGCACCTGGCCGACACGGGGGCGCTGGTGGATCTGCTGGACCGGCTGGTGG
ACGCGGGGAACACGGTGGTGTGCGTGGAGCACAACCTGGAGGTCGTGAAGCGGGCGGACTGGGTGATCGATCTGGGTCCG
GACGGCGGGAAGAAGGGCGGCGAGCTGGTCTTCGCGGGCACGCCGGAGGGGCTGCTGGCGGACCGCATTTCGGTTACCGC
GGAGTATCTGCGGCGGGATCTGGGGCTGCCCGCAGAGCCCCGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(153-249)

ABC transporter (ABC_tran)

(471-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

38.052

100

0.385
  uvrA Streptococcus pneumoniae TIGR4

38.052

100

0.385
  uvrA Streptococcus pneumoniae D39

38.052

100

0.385