Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   KRR37_RS24725 Genome accession   NZ_CP077652
Coordinates   5455881..5456873 (+) Length   330 a.a.
NCBI ID   WP_127466669.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 5450881..5461873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS24705 (KRR37_24520) - 5451125..5451874 (+) 750 WP_053562752.1 enhanced serine sensitivity protein SseB C-terminal domain-containing protein -
  KRR37_RS24710 (KRR37_24525) - 5452150..5453820 (+) 1671 WP_103421293.1 ABC transporter substrate-binding protein -
  KRR37_RS24715 (KRR37_24530) - 5453906..5454910 (+) 1005 WP_127466670.1 ABC transporter permease -
  KRR37_RS24720 (KRR37_24535) - 5454912..5455874 (+) 963 WP_103421295.1 ABC transporter permease -
  KRR37_RS24725 (KRR37_24540) amiE 5455881..5456873 (+) 993 WP_127466669.1 ABC transporter ATP-binding protein Regulator
  KRR37_RS24730 (KRR37_24545) - 5456870..5458030 (+) 1161 WP_127466668.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  KRR37_RS24735 (KRR37_24550) - 5458049..5458708 (+) 660 WP_127466667.1 trimeric intracellular cation channel family protein -
  KRR37_RS24740 (KRR37_24555) - 5458788..5459669 (+) 882 WP_248871440.1 thioesterase family protein -
  KRR37_RS24745 (KRR37_24560) - 5459823..5460458 (-) 636 WP_127466666.1 TetR family transcriptional regulator -
  KRR37_RS24750 (KRR37_24565) - 5460596..5460742 (+) 147 WP_019762994.1 hypothetical protein -
  KRR37_RS24755 (KRR37_24570) - 5460821..5461201 (+) 381 WP_127466665.1 hypothetical protein -

Sequence


Protein


Download         Length: 330 a.a.        Molecular weight: 35470.91 Da        Isoelectric Point: 6.4943

>NTDB_id=506736 KRR37_RS24725 WP_127466669.1 5455881..5456873(+) (amiE) [Streptomyces sp. HNA39]
MPLLSVEELSVTFTARGRKDATAVDGVSFDVDQGQVVGLVGESGCGKSVTSLALMGLLPRKGVRIGGRAEFDGRNLLALG
ERQLRDMRGSQLAMIFQDPLSSLNPVVPIGIQVTEILQRHRGLKGEKARKEAASLLDRVGIPDPDRRLKEYPHQLSGGMR
QRALIAMAVACAPRLLIADEPTTALDVTIQAQILELLKELVDQEGTALLMITHDLGVVAGLCDEVNVLYAGRAVESAGRR
ELFAHPTHPYAHGLLGSIPRLDAPRGEPLNPIRGSINDKIAWADGCAFAPRCDHYTMECLTGTPELTEPRAAGHQVRCVN
PVLPTAEVPA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=506736 KRR37_RS24725 WP_127466669.1 5455881..5456873(+) (amiE) [Streptomyces sp. HNA39]
ATGCCACTGCTCTCAGTTGAAGAACTCAGCGTCACCTTCACCGCACGCGGCCGCAAGGACGCCACGGCCGTGGACGGCGT
CTCCTTCGACGTCGACCAGGGCCAGGTCGTGGGCCTGGTGGGCGAGTCCGGGTGCGGCAAGTCCGTCACCTCGCTGGCCC
TGATGGGGCTGCTGCCCCGCAAGGGCGTACGGATCGGGGGACGGGCCGAGTTCGACGGACGGAACCTGCTGGCCCTCGGC
GAGCGCCAGCTCCGCGACATGCGCGGCAGCCAGCTCGCGATGATCTTCCAGGACCCGCTCTCCTCGCTGAACCCGGTCGT
CCCCATCGGCATCCAGGTCACCGAGATCCTCCAGCGCCACCGCGGCCTCAAGGGCGAGAAGGCCCGCAAGGAAGCGGCGT
CGCTCCTCGACCGGGTCGGCATCCCCGACCCGGACCGGCGGCTCAAGGAGTACCCGCACCAGCTCTCCGGCGGTATGCGC
CAGCGTGCGCTGATCGCCATGGCGGTGGCCTGCGCGCCCCGTCTGCTGATCGCGGACGAGCCGACCACCGCCCTGGACGT
CACCATCCAGGCCCAGATCCTGGAACTGCTCAAGGAACTGGTCGACCAGGAGGGCACCGCCCTGCTGATGATCACCCACG
ACCTGGGCGTCGTCGCCGGCCTCTGCGACGAGGTCAACGTCCTCTACGCGGGCCGGGCCGTGGAGTCGGCGGGCCGCCGC
GAGCTGTTCGCCCACCCCACCCACCCGTACGCGCACGGGCTGCTCGGCTCCATCCCGCGGCTCGACGCGCCCCGAGGTGA
GCCGCTCAACCCGATCCGCGGCTCCATCAACGACAAGATCGCCTGGGCCGACGGCTGCGCCTTCGCACCCCGGTGCGACC
ACTACACGATGGAGTGCCTCACCGGCACCCCCGAACTGACCGAACCACGCGCGGCCGGACACCAGGTCCGCTGCGTCAAC
CCGGTCCTGCCCACCGCGGAGGTCCCGGCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.644

90.303

0.421

  amiE Streptococcus thermophilus LMG 18311

46.416

88.788

0.412

  amiE Streptococcus thermophilus LMD-9

46.416

88.788

0.412

  oppD Streptococcus mutans UA159

46.392

88.182

0.409