Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KRR37_RS22755 Genome accession   NZ_CP077652
Coordinates   5010947..5011924 (+) Length   325 a.a.
NCBI ID   WP_248871322.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5005947..5016924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS22735 (KRR37_22570) - 5005976..5007118 (+) 1143 WP_127468419.1 dipeptide ABC transporter ATP-binding protein -
  KRR37_RS22740 (KRR37_22575) - 5007305..5008939 (+) 1635 WP_127468418.1 ABC transporter substrate-binding protein -
  KRR37_RS22745 (KRR37_22580) - 5009040..5009963 (+) 924 WP_248871321.1 ABC transporter permease -
  KRR37_RS22750 (KRR37_22585) - 5009956..5010933 (+) 978 WP_127468417.1 ABC transporter permease -
  KRR37_RS22755 (KRR37_22590) amiE 5010947..5011924 (+) 978 WP_248871322.1 ABC transporter ATP-binding protein Regulator
  KRR37_RS22760 (KRR37_22595) - 5011914..5013095 (+) 1182 WP_248871323.1 dipeptide ABC transporter ATP-binding protein -
  KRR37_RS22765 (KRR37_22600) - 5013271..5013600 (+) 330 WP_206304588.1 helix-turn-helix transcriptional regulator -
  KRR37_RS22770 (KRR37_22605) - 5013857..5014357 (+) 501 WP_070205112.1 hypothetical protein -
  KRR37_RS22775 (KRR37_22610) - 5014595..5016301 (+) 1707 WP_248871324.1 hypothetical protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35834.69 Da        Isoelectric Point: 6.7671

>NTDB_id=506729 KRR37_RS22755 WP_248871322.1 5010947..5011924(+) (amiE) [Streptomyces sp. HNA39]
MLLEVRDLHVEFHTREGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKIAGGEILFKGQDLLKLKP
EERRKIRGQEMAMIFQDALSSLNPVLTVGEQLGEMYVVHRGMSRKDAKAKAVELMERVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLGELQREFNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGQELYAIRGLPPNLLHIPPGCAFNPRCPMARDVCRTDVPPLYEVDEQRRSACHFWKE
TLDGR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=506729 KRR37_RS22755 WP_248871322.1 5010947..5011924(+) (amiE) [Streptomyces sp. HNA39]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGCGAAGGCGTCGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAAGGCGAGACGCTCGCCGTGCTCGGTGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCGGTCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCGCCGGCGGCGAGATCCTCTTCAAGGGCCAGGACCTGCTGAAGCTCAAGCCC
GAGGAGCGGCGCAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCCCTCTCCTCCCTGAACCCGGTCCTCAC
CGTGGGCGAACAGCTCGGGGAGATGTACGTCGTCCACCGCGGGATGTCCCGCAAGGACGCCAAGGCCAAGGCCGTCGAGC
TGATGGAGCGGGTGCGCATCCCGGCGGCGAAGGAGCGGGTCGGCCAGTATCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCCCTGGAACCGTCCCTGATCATCGCGGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGGGGAACTCCAGCGCGAGTTCAACATGGGCCTCATCCTCATCACCCACGACC
TGGGCGTCGTCGCGGACGTGGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCGTACACCAAGGGCCTCCTCCAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAGGGGGCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCGTTCAACCCCCGCTGCCCGATGGCCA
GGGACGTGTGCCGCACCGATGTGCCGCCGCTCTACGAGGTGGACGAGCAGCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGGACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.297

99.385

0.48
  oppD Streptococcus mutans UA159

48.089

96.615

0.465
  amiE Streptococcus thermophilus LMG 18311

48.065

95.385

0.458
  amiE Streptococcus thermophilus LMD-9

48.065

95.385

0.458