Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KRR37_RS10440 Genome accession   NZ_CP077652
Coordinates   2357711..2358742 (-) Length   343 a.a.
NCBI ID   WP_248870314.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352711..2363742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS10420 (KRR37_10370) orn 2353733..2354371 (+) 639 WP_053562986.1 oligoribonuclease -
  KRR37_RS10430 (KRR37_10380) - 2354645..2355235 (-) 591 WP_127467032.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -
  KRR37_RS10435 (KRR37_10385) - 2355479..2357545 (-) 2067 WP_248872191.1 TerD family protein -
  KRR37_RS10440 (KRR37_10390) cytR 2357711..2358742 (-) 1032 WP_248870314.1 LacI family DNA-binding transcriptional regulator Regulator
  KRR37_RS10445 (KRR37_10395) - 2358938..2360401 (-) 1464 WP_248870315.1 GH1 family beta-glucosidase -
  KRR37_RS10450 (KRR37_10400) - 2360472..2361392 (-) 921 WP_248870316.1 ABC transporter permease subunit -
  KRR37_RS10455 (KRR37_10405) - 2361389..2362411 (-) 1023 WP_127467029.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36847.84 Da        Isoelectric Point: 5.7563

>NTDB_id=506706 KRR37_RS10440 WP_248870314.1 2357711..2358742(-) (cytR) [Streptomyces sp. HNA39]
MAAGRERNGGRPTLEEVAARAGVGRGTASRVINGSPRVSEATREAVEAAVAELGYVPNRAARALAGNRTDAIALVVPEPE
TRFFAEPYFSAIVRGVGAALADTEMQLLLTLAGSDRERRRLAQYLTAHRVDGVLLVAVHADDPLPELLEQLGMPCVISGA
RHAAEPLASVDSDNFEGARAAVEHLVSRGRRRVATITGRLEVYGAQRRLDGYRAALATAGLPPDERLIAPADFTEEGGAR
AMRELLARRPDLDAVFAASDVMAAGARQVLREADRRIPEDVALIGFDDSVVARHMHPPLTSVRQPIEEMGRRMAELLLEE
IAGRSGERPTVVLPTELVVRDSS

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=506706 KRR37_RS10440 WP_248870314.1 2357711..2358742(-) (cytR) [Streptomyces sp. HNA39]
ATGGCGGCAGGGCGGGAACGGAACGGCGGGCGGCCCACGCTCGAAGAGGTCGCGGCCCGGGCGGGCGTCGGCCGCGGCAC
CGCCTCCCGGGTCATCAACGGCTCGCCCCGGGTCAGCGAGGCGACCCGCGAGGCGGTCGAGGCGGCCGTGGCGGAGCTGG
GCTACGTCCCGAACCGCGCCGCCCGCGCCCTCGCCGGGAACCGTACGGATGCCATCGCGCTGGTGGTGCCGGAGCCGGAG
ACCCGGTTCTTCGCGGAGCCGTACTTCTCCGCCATCGTGCGCGGCGTGGGCGCTGCCCTGGCCGACACGGAGATGCAGCT
CCTCCTCACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGCCTCGCCCAGTATCTGACCGCGCACCGGGTGGACGGCGTCC
TGCTGGTGGCCGTGCACGCGGACGACCCGCTGCCGGAGCTGCTGGAACAGCTCGGCATGCCCTGCGTGATCAGCGGTGCG
CGCCATGCGGCCGAGCCCCTCGCCTCGGTCGACTCGGACAACTTCGAGGGCGCGCGGGCGGCCGTCGAGCACCTGGTCTC
CCGGGGCCGCCGCCGGGTCGCCACGATCACCGGCCGCCTGGAGGTCTACGGCGCCCAGCGCCGCCTGGACGGCTACCGCG
CGGCCCTCGCCACTGCGGGCCTGCCCCCGGACGAGCGCCTGATCGCCCCCGCCGACTTCACCGAGGAGGGCGGCGCCCGG
GCGATGCGCGAACTCCTGGCCCGCCGCCCCGACCTGGACGCGGTCTTCGCCGCCTCCGACGTGATGGCGGCCGGCGCCCG
CCAGGTCCTCCGCGAGGCGGACCGCCGCATCCCCGAGGACGTGGCCCTGATCGGCTTCGACGACTCGGTGGTCGCCCGCC
ATATGCACCCGCCCCTCACCAGCGTCCGCCAGCCGATCGAGGAGATGGGCCGCCGCATGGCCGAACTCCTGCTGGAGGAG
ATCGCCGGCCGCTCCGGCGAACGGCCGACGGTGGTGCTCCCGACGGAGCTGGTGGTCCGCGACTCGTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(13-58)

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.578

98.834

0.362