Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KRR37_RS06210 Genome accession   NZ_CP077652
Coordinates   1370520..1373558 (-) Length   1012 a.a.
NCBI ID   WP_127466149.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365520..1378558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS06190 (KRR37_06160) - 1367012..1367929 (-) 918 WP_248869923.1 hypothetical protein -
  KRR37_RS06195 (KRR37_06165) - 1367934..1368545 (-) 612 WP_248869924.1 papain-like cysteine protease family protein -
  KRR37_RS06200 (KRR37_06170) - 1368772..1369698 (+) 927 WP_127466150.1 hypothetical protein -
  KRR37_RS06205 (KRR37_06175) - 1369862..1370290 (-) 429 WP_019764263.1 Rieske (2Fe-2S) protein -
  KRR37_RS06210 (KRR37_06180) uvrA 1370520..1373558 (-) 3039 WP_127466149.1 excinuclease ABC subunit UvrA Machinery gene
  KRR37_RS06215 (KRR37_06185) - 1373736..1374425 (+) 690 WP_103418716.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  KRR37_RS06220 (KRR37_06190) - 1374454..1375110 (+) 657 WP_248869925.1 MBL fold metallo-hydrolase -
  KRR37_RS06225 (KRR37_06195) - 1375280..1376299 (-) 1020 WP_127466147.1 TerC family protein -

Sequence

Protein


Download         Length: 1012 a.a.        Molecular weight: 110746.01 Da        Isoelectric Point: 8.2281

>NTDB_id=506696 KRR37_RS06210 WP_127466149.1 1370520..1373558(-) (uvrA) [Streptomyces sp. HNA39]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPIARQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGATIQLSEPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGALAKALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHTEAESDSSR
ERFEGYMREVPCPTCEGSRLKPIVLAVTVMERSIAEVSAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLSNKESVTGQYLSGKRSIPTPDVRRPVDPARSLTVHGARENNLHDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPAIARHLRTLNDVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGNGGGMVVAEGTPEQVASVPASHTGKFLQGILDADRISEAAVPSGRG
AARKTATARKTAAAKKTAAPKKAATATKKAAATRKTAVSKATAKKATRARKA

Nucleotide


Download         Length: 3039 bp        

>NTDB_id=506696 KRR37_RS06210 WP_127466149.1 1370520..1373558(-) (uvrA) [Streptomyces sp. HNA39]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGATCTCCCCCGTGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCCCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGATTTCATCGAGGGTCTC
TCCCCGGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGCCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCGGCCGCCCCATCGCCCGCCAGTCGCCGC
AGGCCATCGTGGACAAGGTCCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTCCTCTCGCCGCTCGTCCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGGTACAGCCGCGCCCGGGTCGACGGCGCCACCATCCAGCT
CTCCGAGCCGCCCACGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGCCGCCTCACCGACTCCGTGGAGACCGCCCTCGGCCTCTCCGGCGGCATGGTCGTCCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTATTCGGAGCACCTCTACTGCGCCTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCGGACTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGAGAAGTCCCTCGACGAAGGGGCGATCCACCCCTGGTCCCACGGCCACACCAAG
GAGTACTTCGGCCGGCTGATCGGCGCCCTCGCCAAGGCCCTCGGCTTCCGTACGGACATCCCCTGGGCCGGACTGCCGCA
GCGCGCCAAGAAGGCCCTGCTCCACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGGTACGGGCGCGAGCGCG
CCTACACCACGCCCGCCTTCGAGGGCGCGGTCCAGTTCGTCAAGCGGCGCCACACCGAGGCCGAGAGCGACTCCAGCCGC
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCTCGCGGCTCAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAGGTCCATCGCCGAGGTCTCCGCCATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGCCTCAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAACGGGTCCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTGGTCGACGTCGGC
CTGGACTACCTCTCGCTCAACCGCGCGGCCGGCACCCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTGGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGCCTCCACCAGCGCGACAACCACCGGCTGA
TCGAGACCCTGGTCCGCCTCCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTGGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTCGTCCACTCCGGCTCGCTCAAGGAGCTGCT
CTCCAACAAGGAGTCGGTCACCGGGCAGTATCTGTCCGGCAAGCGGTCCATCCCGACGCCGGACGTCCGCCGCCCGGTCG
ACCCGGCCCGCAGCCTCACGGTGCACGGCGCCCGTGAGAACAACCTGCACGACATCGACGTCTCCTTCCCGCTCGGCGTG
CTCACCGCCGTCACCGGAGTCTCCGGCTCCGGGAAGTCGACCCTGGTCAACGACATCCTCTATACCCACCTGGCCCGCGA
GCTGAACGGCGCCAAGTCGGTCCCCGGCCGCCACACCCGGGTCGACGGCGACGACCTCGTCGACAAGGTGGTCCACGTCG
ACCAGTCTCCGATCGGCCGGACCCCCCGGTCCAACCCGGCGACGTACACCGGGGTCTTCGACCACGTCCGCAAGCTGTTC
GCGGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGTG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGGCCATCGCCCGCCATCTCCGTACGCTCAACGACGTGGGTCTGGGGTACGTCCG
GCTCGGCCAGTCCGCGCCGACCCTCTCCGGCGGTGAGGCGCAGCGCGTCAAGCTGGCGAGCGAGCTGCAGAAGCGCTCCA
CCGGGCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTCCACTTCGAGGACATCAGCAAGCTGATCACCGTCCTC
TCCGGCCTGGTCGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTGGACGTCATCAAGACCGCGGACTGGGTCAT
CGACATGGGCCCCGAAGGGGGCAACGGCGGTGGCATGGTCGTGGCCGAGGGCACGCCGGAGCAGGTCGCCTCGGTCCCCG
CCAGCCACACCGGGAAGTTCCTCCAGGGGATCCTGGACGCGGACCGGATCAGCGAGGCGGCGGTGCCGTCGGGGCGGGGT
GCGGCCCGTAAGACCGCCACCGCCCGGAAGACCGCCGCGGCGAAGAAGACGGCGGCGCCGAAGAAGGCCGCCACCGCCAC
CAAGAAGGCCGCGGCGACCAGGAAGACGGCGGTCAGCAAGGCCACCGCGAAGAAGGCGACGCGCGCCCGCAAGGCGTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.481

93.775

0.53
  uvrA Streptococcus pneumoniae TIGR4

56.481

93.775

0.53
  uvrA Streptococcus pneumoniae D39

56.481

93.775

0.53