Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KTN07_RS13330 Genome accession   NZ_CP077649
Coordinates   2810535..2812031 (+) Length   498 a.a.
NCBI ID   WP_001461670.1    Uniprot ID   -
Organism   Escherichia coli strain ST865     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2805535..2817031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN07_RS13300 (KTN07_13300) tusA 2805782..2806027 (+) 246 WP_000130621.1 sulfurtransferase TusA -
  KTN07_RS13305 (KTN07_13305) zntA 2806129..2808327 (-) 2199 WP_089667501.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  KTN07_RS13310 (KTN07_13310) yhhN 2808401..2809027 (-) 627 WP_000964718.1 lysoplasmalogenase -
  KTN07_RS13315 (KTN07_13315) yhhM 2809168..2809527 (+) 360 WP_000042892.1 DUF2500 domain-containing protein -
  KTN07_RS13320 (KTN07_13320) yhhL 2809530..2809799 (-) 270 WP_001295207.1 DUF1145 family protein -
  KTN07_RS13325 (KTN07_13325) rsmD 2809789..2810385 (-) 597 WP_000743193.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  KTN07_RS13330 (KTN07_13330) pilA 2810535..2812031 (+) 1497 WP_001461670.1 signal recognition particle-docking protein FtsY Machinery gene
  KTN07_RS13335 (KTN07_13335) ftsE 2812034..2812702 (+) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  KTN07_RS13340 (KTN07_13340) ftsX 2812695..2813753 (+) 1059 WP_217609270.1 permease-like cell division protein FtsX -
  KTN07_RS13345 (KTN07_13345) rpoH 2813997..2814851 (+) 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
  KTN07_RS13350 (KTN07_13350) livJ 2815123..2816226 (+) 1104 WP_001350438.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54729.54 Da        Isoelectric Point: 4.1468

>NTDB_id=506653 KTN07_RS13330 WP_001461670.1 2810535..2812031(+) (pilA) [Escherichia coli strain ST865]
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAE
SEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
AAEAAEEAVMVVPPTEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIAD
VGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ
QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK
IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIED
LRPFKADDFIEALFARED

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=506653 KTN07_RS13330 WP_001461670.1 2810535..2812031(+) (pilA) [Escherichia coli strain ST865]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AGTTCAGAATGAACAACCGGTTGTAGAAGAAATCGTTCAGGCGCAAGAGCCTGTGAAGGCTTCAGAACAAGCCGTTGAAG
AGCAGCCGCAGGCGCATACTGAGGCCGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTTGCTGAA
AGTGAAAAAGCGCAGCCTGAAGCGGAAGTCGTTGCACAGCCGGAACCGGTCGTAGAAGAAACGCCGGAGCCAGTGGCTAT
CGAACGTGAAGAGCTGCCGTTGCCGGAAGACGTCAACGCCGAAGAGGTTTCGCCAGAAGAGTGGCAGGCTGAAGCGGAAA
CCGTAGAGATTGTCGAAGCGGCGGAAGAAGAAGCGGCTAAAGAAGAAATCACCGACGAAGAGCTGGAAGCACAGGCGCTG
GCTGCCGAAGCGGCAGAAGAGGCGGTGATGGTGGTTCCTCCGACAGAAGAAGAGCAGCCGGTGGAAGAAATCGCTCAGGA
GCAGGAAAAACCGACCAAAGAAGGTTTCTTCGCGCGCCTGAAACGCAGCCTGTTAAAAACCAAAGAAAATCTCGGTTCCG
GATTTATCAGCCTGTTCCGCGGTAAAAAAATCGACGATGATCTGTTTGAAGAGCTGGAAGAACAGTTGTTGATCGCCGAT
GTGGGCGTGGAAACCACACGTAAAATTATCACCAATCTGACGGAAGGCGCATCCCGCAAGCAGCTTCGTGATGCCGAGGC
GCTCTATGGCCTGCTGAAAGAAGAGATGGGCGAGATTCTGGCGAAAGTCGATGAGCCGCTGAATGTTGAAGGTAAAACGC
CGTTCGTGATCCTGATGGTGGGCGTCAACGGTGTGGGTAAAACCACGACGATTGGTAAGCTGGCGCGTCAGTTTGAGCAG
CAGGGTAAATCGGTGATGCTGGCGGCGGGCGATACTTTCCGTGCAGCTGCGGTTGAACAGCTTCAGGTCTGGGGTCAGCG
CAACAATATTCCGGTGATTGCCCAGCATACCGGGGCGGATTCCGCCTCTGTTATCTTCGACGCTATTCAGGCAGCTAAAG
CGCGTAATATCGACGTCCTGATTGCCGATACAGCCGGACGCCTGCAGAACAAATCGCACCTGATGGAAGAGTTGAAGAAA
ATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAA
CGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCTGTTGGCTTAACCGGCATCACGCTAACGAAACTGGACGGCACGGCGA
AAGGCGGGGTAATTTTCTCGGTGGCTGACCAGTTTGGTATCCCTATCCGCTACATTGGTGTCGGCGAACGTATTGAGGAT
TTGCGTCCGTTTAAGGCGGACGACTTTATAGAGGCACTTTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(294-494)

SRP54-type protein, helical bundle domain (SRP54_N)

(211-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.831

77.309

0.378