Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2437_RS08460 Genome accession   NZ_CP065061
Coordinates   1799089..1800450 (-) Length   453 a.a.
NCBI ID   WP_043030409.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794089..1805450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS08440 (IEMOCGPF_01688) gltX 1794783..1796228 (-) 1446 WP_165628058.1 glutamate--tRNA ligase -
  I2437_RS08445 (IEMOCGPF_01689) - 1796921..1797634 (-) 714 WP_012678956.1 TIGR00266 family protein -
  I2437_RS08450 (IEMOCGPF_01690) - 1797762..1798268 (-) 507 WP_165619481.1 carbonic anhydrase -
  I2437_RS08455 (IEMOCGPF_01691) - 1798653..1798928 (+) 276 WP_050315977.1 hypothetical protein -
  I2437_RS08460 (IEMOCGPF_01692) radA 1799089..1800450 (-) 1362 WP_043030409.1 DNA repair protein RadA Machinery gene
  I2437_RS08465 (IEMOCGPF_01693) - 1800517..1800963 (-) 447 WP_012678953.1 dUTP diphosphatase -
  I2437_RS08470 (IEMOCGPF_01694) - 1801163..1801930 (-) 768 WP_165628057.1 epoxyqueuosine reductase QueH -
  I2437_RS08475 (IEMOCGPF_01695) - 1802092..1803888 (-) 1797 WP_165628056.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49374.80 Da        Isoelectric Point: 7.0274

>NTDB_id=506623 I2437_RS08460 WP_043030409.1 1799089..1800450(-) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=506623 I2437_RS08460 WP_043030409.1 1799089..1800450(-) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCTTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGTGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCTATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGTTCGGT
CAGTCAGGTTCGAGAGGTCACTGCCGAATTGCTGCAGCTTGCAAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGTGAGAGG
CATCATACCTTTCGTATCTTGCGAGCTGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCTTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGCTACAAGGAAAAACCGACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGTTTTACCAAGCTTTACGCGCCTAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAGGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.513

99.779

0.843
  radA Streptococcus pneumoniae D39

84.513

99.779

0.843
  radA Streptococcus pneumoniae R6

84.513

99.779

0.843
  radA Streptococcus pneumoniae TIGR4

84.513

99.779

0.843
  radA Streptococcus mitis NCTC 12261

84.071

99.779

0.839
  radA Streptococcus mitis SK321

84.071

99.779

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614