Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I2437_RS06535 Genome accession   NZ_CP065061
Coordinates   1373186..1374988 (-) Length   600 a.a.
NCBI ID   WP_206157755.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368186..1379988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS06510 (IEMOCGPF_01299) prsA 1369266..1370267 (-) 1002 WP_206157753.1 peptidylprolyl isomerase PrsA -
  I2437_RS06515 (IEMOCGPF_01300) - 1370330..1371037 (-) 708 WP_043030615.1 O-methyltransferase -
  I2437_RS06520 (IEMOCGPF_01301) - 1371119..1371757 (-) 639 WP_165627703.1 HAD family hydrolase -
  I2437_RS06525 (IEMOCGPF_01302) - 1371807..1372439 (-) 633 WP_206157754.1 HAD-IA family hydrolase -
  I2437_RS06530 (IEMOCGPF_01303) - 1372429..1372986 (-) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  I2437_RS06535 (IEMOCGPF_01304) pepF 1373186..1374988 (-) 1803 WP_206157755.1 oligoendopeptidase F Regulator
  I2437_RS06540 (IEMOCGPF_01305) - 1374978..1375955 (-) 978 WP_165627697.1 competence protein CoiA family protein -
  I2437_RS06545 (IEMOCGPF_01306) - 1376047..1376763 (-) 717 WP_021320533.1 pseudouridine synthase -
  I2437_RS06550 (IEMOCGPF_01307) nagB 1376935..1377639 (-) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  I2437_RS06555 (IEMOCGPF_01308) queA 1377907..1378935 (+) 1029 WP_014622548.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68996.73 Da        Isoelectric Point: 4.6060

>NTDB_id=506612 I2437_RS06535 WP_206157755.1 1373186..1374988(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDIKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=506612 I2437_RS06535 WP_206157755.1 1373186..1374988(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTATACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
GACAGAAGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCCAAGTATCAGGAATATCAGGCAAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGATCATTTCTTTGATAAATTGTTCAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGAGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCTTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCCTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATATAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATCTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACCGAAGC
TTTGTTACATGAGGTGCAAGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGCGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCAGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73