Detailed information NTG0506546

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2436_RS05420
• Genome accession: NZ_CP065060
• Coordinates: 1142527..1144620 (+)
• Length: 697 a.a.
• NCBI ID: WP_206152630.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ28
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1137527..1149620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2436_RS05400 (GDAKBCAL_01079)	-	1137724..1139007 (-)	1284	WP_206152628.1	homoserine dehydrogenase	-
I2436_RS05405 (GDAKBCAL_01080)	-	1139179..1140144 (+)	966	WP_111710587.1	polysaccharide deacetylase family protein	-
I2436_RS05410 (GDAKBCAL_01081)	-	1140431..1141237 (-)	807	WP_206152629.1	DNA/RNA non-specific endonuclease	-
I2436_RS05415 (GDAKBCAL_01082)	ndk	1141737..1142156 (-)	420	WP_012515690.1	nucleoside-diphosphate kinase	-
I2436_RS05420 (GDAKBCAL_01083)	clpC	1142527..1144620 (+)	2094	WP_206152630.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2436_RS05425 (GDAKBCAL_01084)	-	1144804..1147815 (-)	3012	WP_012515693.1	leucine-rich repeat domain-containing protein	-
I2436_RS05430 (GDAKBCAL_01085)	yihA	1148177..1148776 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76753.75 Da
• Isoelectric Point: 5.1207

>NTDB_id=506546 I2436_RS05420 WP_206152630.1 1142527..1144620(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MTTYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAAAEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAEEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGTND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=506546 I2436_RS05420 WP_206152630.1 1142527..1144620(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGACAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTTAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAGCTGAAGGACAAGACAAACAGGCTGGCAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCGACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAACCCTGTGCTTGTCGGTGACGCTGGTGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATCGTCAATGGTGATGTGCCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAAGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATTCTTGGTGCAGGGTCAGCTGGTTCAGACTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATATTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTGCCAGATTCTGTCTTGAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGAAGAAGA
CTTTGAAAAGGCCTTAACTGCTAAGACACGCATTGAGGAGCTTCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGACATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGACTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAACAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGCTCCTTCCTCTTTGTTGGTCCGACTGGTG
TCGGCAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGGCAAGGTAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGGATTAGCCTTGAGGTGACTGACGATGTT
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCAATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGCATTACGGATTACTACCTGGATCACCCGACTGCTAAACACCTATTAGCAAGCCTTGATCAAGATACTATTACGA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (257-352)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.063	100	0.481
clpE	Streptococcus mutans UA159	48.17	97.991	0.472
clpE	Streptococcus pneumoniae D39	50.952	90.387	0.461
clpE	Streptococcus pneumoniae R6	50.952	90.387	0.461
clpE	Streptococcus pneumoniae Rx1	50.952	90.387	0.461
clpE	Streptococcus pneumoniae TIGR4	50.952	90.387	0.461
clpC	Bacillus subtilis subsp. subtilis str. 168	45.833	89.527	0.41
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.718	88.666	0.379
clpC	Streptococcus thermophilus LMG 18311	42.557	88.666	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376