Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   I2436_RS02820 Genome accession   NZ_CP065060
Coordinates   576620..577657 (+) Length   345 a.a.
NCBI ID   WP_012678320.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 571620..582657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS02795 (GDAKBCAL_00558) - 571933..573264 (+) 1332 WP_206153020.1 dipeptidase -
  I2436_RS02800 (GDAKBCAL_00559) arcC 573282..574232 (+) 951 WP_043029469.1 carbamate kinase -
  I2436_RS02805 (GDAKBCAL_00560) asnA 574451..575443 (+) 993 WP_012515219.1 aspartate--ammonia ligase -
  I2436_RS02810 (GDAKBCAL_00561) rsmD 575613..576152 (+) 540 WP_206153022.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I2436_RS02815 (GDAKBCAL_00562) coaD 576142..576642 (+) 501 WP_206153023.1 pantetheine-phosphate adenylyltransferase -
  I2436_RS02820 (GDAKBCAL_00563) sepM 576620..577657 (+) 1038 WP_012678320.1 SepM family pheromone-processing serine protease Regulator
  I2436_RS02825 (GDAKBCAL_00564) - 578258..578872 (+) 615 WP_206153025.1 YutD family protein -
  I2436_RS02830 (GDAKBCAL_00565) rlmN 578876..579958 (+) 1083 WP_206153027.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I2436_RS02835 (GDAKBCAL_00566) - 580547..581425 (+) 879 WP_012678317.1 ABC transporter ATP-binding protein -
  I2436_RS02840 (GDAKBCAL_00567) - 581429..582154 (+) 726 WP_012515226.1 ABC transporter permease -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37472.10 Da        Isoelectric Point: 9.4223

>NTDB_id=506534 I2436_RS02820 WP_012678320.1 576620..577657(+) (sepM) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MKTIKKFKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=506534 I2436_RS02820 WP_012678320.1 576620..577657(+) (sepM) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGAAAACAATAAAAAAATTTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATAAGG
AAAAGGGAGCTTATCAGTTTGTTGTGGTGAGCCTCAGTCGGGCTACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGATTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTACCAGGCCCTTACTCTAGCAGGTAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAACGGTAAA
ACATTTACAACGTCTGCCGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACCGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGCATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

70.145

100

0.701