Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   I2436_RS02180 Genome accession   NZ_CP065060
Coordinates   442338..443063 (+) Length   241 a.a.
NCBI ID   WP_165627958.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 437338..448063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS02150 (GDAKBCAL_00430) tsaE 437933..438376 (+) 444 WP_206152956.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I2436_RS02155 (GDAKBCAL_00431) - 438369..438896 (+) 528 WP_206152958.1 GNAT family N-acetyltransferase -
  I2436_RS02160 (GDAKBCAL_00432) - 438897..440159 (+) 1263 WP_206152960.1 LCP family protein -
  I2436_RS02165 (GDAKBCAL_00433) - 440323..440625 (-) 303 WP_206152962.1 chemotaxis protein -
  I2436_RS02170 (GDAKBCAL_00434) - 440622..441041 (-) 420 WP_111677795.1 HIT family protein -
  I2436_RS02175 (GDAKBCAL_00435) - 441493..441801 (-) 309 WP_231196961.1 hypothetical protein -
  I2436_RS02180 (GDAKBCAL_00436) pptA 442338..443063 (+) 726 WP_165627958.1 ABC transporter ATP-binding protein Regulator
  I2436_RS02185 (GDAKBCAL_00437) - 443067..444101 (+) 1035 WP_021320422.1 ABC transporter permease -
  I2436_RS02190 (GDAKBCAL_00438) - 444164..444955 (+) 792 WP_012515084.1 phosphotransferase family protein -
  I2436_RS02195 (GDAKBCAL_00439) trmB 444955..445590 (+) 636 WP_206152964.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I2436_RS02205 (GDAKBCAL_00441) - 446214..446729 (-) 516 WP_206152966.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26520.83 Da        Isoelectric Point: 4.8615

>NTDB_id=506531 I2436_RS02180 WP_165627958.1 442338..443063(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDLELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=506531 I2436_RS02180 WP_165627958.1 442338..443063(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTTGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATTTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGGCAGGTGCGTGCGCAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.059

99.17

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

99.17

0.726