Detailed information NTG0506466

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: I2435_RS01290
• Genome accession: NZ_CP065059
• Coordinates: 245618..246979 (+)
• Length: 453 a.a.
• NCBI ID: WP_206156896.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ25
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	243779..244897	245618..246979	flank	721

Gene organization within MGE regions

Location: 243779..246979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2435_RS01280 (JFMEOBDD_00255)	-	243779..244897 (+)	1119	WP_115266811.1	ISAs1 family transposase	-
I2435_RS01285 (JFMEOBDD_00256)	-	245105..245551 (+)	447	WP_014622233.1	dUTP diphosphatase	-
I2435_RS01290 (JFMEOBDD_00257)	radA	245618..246979 (+)	1362	WP_206156896.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49360.82 Da
• Isoelectric Point: 7.0274

>NTDB_id=506466 I2435_RS01290 WP_206156896.1 245618..246979(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MAKKKARFICGECGYQSLKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFA

Nucleotide

• Length: 1362 bp

>NTDB_id=506466 I2435_RS01290 WP_206156896.1 245618..246979(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACTCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAAGGATCGGT
CAGTCAGGTGAGAGAGGTTACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATCGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCACGTATGCTGGAGCATATGGTTGATACGGTGCTTTATTTTGAAGGGGAAAGA
CACCACACCTTCCGAATTCTGCGAGCTGTTAAAAACCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTCCTCAATCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGTGTTAGTCTGATTATGGCTGTCTTGGAAAAGCGCTGCGGCCTGCTGCTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATCAATGAAGCTGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTTTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (61-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (360-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	84.327	100	0.843
radA	Streptococcus pneumoniae D39	84.327	100	0.843
radA	Streptococcus pneumoniae R6	84.327	100	0.843
radA	Streptococcus pneumoniae TIGR4	84.327	100	0.843
radA	Streptococcus mitis NCTC 12261	83.885	100	0.839
radA	Streptococcus mitis SK321	83.885	100	0.839
radA	Bacillus subtilis subsp. subtilis str. 168	61.148	100	0.611