Detailed information NTG0050645

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: MY9_RS18975
• Genome accession: NC_017743
• Coordinates: 3743544..3744689 (+)
• Length: 381 a.a.
• NCBI ID: WP_014665773.1
• Uniprot ID: -
• Organism: Bacillus sp. JS
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3738544..3749689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY9_RS18950 (MY9_3827)	-	3738559..3739839 (+)	1281	WP_014665768.1	pitrilysin family protein	-
MY9_RS18955 (MY9_3828)	-	3739836..3740537 (+)	702	WP_014665769.1	bacteriocin biosynthesis protein AlbG	-
MY9_RS18960 (MY9_3829)	-	3740543..3741919 (-)	1377	WP_014665770.1	YncE family protein	-
MY9_RS18965 (MY9_3830)	-	3741959..3743314 (-)	1356	WP_014665771.1	YncE family protein	-
MY9_RS18975 (MY9_3832)	rapF	3743544..3744689 (+)	1146	WP_014665773.1	tetratricopeptide repeat protein	Regulator
MY9_RS18980 (MY9_3833)	-	3744673..3744792 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
MY9_RS18985 (MY9_3834)	-	3744891..3745364 (+)	474	WP_014665775.1	YbaK/EbsC family protein	-
MY9_RS18990 (MY9_3835)	speB	3745396..3746268 (-)	873	WP_003227545.1	agmatinase	-
MY9_RS18995 (MY9_3836)	speE	3746329..3747159 (-)	831	WP_003227543.1	spermidine synthase	-
MY9_RS19000 (MY9_3837)	-	3747361..3749436 (+)	2076	WP_014665776.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45549.19 Da
• Isoelectric Point: 5.0684

>NTDB_id=50645 MY9_RS18975 WP_014665773.1 3743544..3744689(+) (rapF) [Bacillus sp. JS]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKSEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLEGKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=50645 MY9_RS18975 WP_014665773.1 3743544..3744689(+) (rapF) [Bacillus sp. JS]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATCCC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGACCAAGACCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTATTATTTTAATTTCTTTAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAACTGGTTTTTG
TGAAAGACAAAATCGATAAAGCGGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGTCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAT
CAGAGCAGCAGCCGCAATTAATGGGAAGAACTCTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAGGTAAAATGATGTATGCAGATATCGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

• Tetratricopeptide repeat (TPR_8) (263-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57