Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SCI_RS08035 Genome accession   NC_022238
Coordinates   1608307..1609095 (-) Length   262 a.a.
NCBI ID   WP_003070508.1    Uniprot ID   F9P7E1
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603307..1614095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS10725 - 1603472..1603642 (-) 171 WP_006268168.1 hypothetical protein -
  SCI_RS08015 (SCI_1570) gatA 1603646..1605106 (-) 1461 WP_020998012.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SCI_RS08020 (SCI_1571) gatC 1605106..1605408 (-) 303 WP_003026120.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SCI_RS08025 (SCI_1572) aspS 1605485..1607221 (-) 1737 WP_006268102.1 aspartate--tRNA ligase -
  SCI_RS08030 (SCI_1574) - 1607732..1608307 (-) 576 WP_006268106.1 cysteine hydrolase family protein -
  SCI_RS08035 (SCI_1575) codY 1608307..1609095 (-) 789 WP_003070508.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SCI_RS08040 (SCI_1576) - 1609263..1610477 (-) 1215 WP_003070510.1 pyridoxal phosphate-dependent aminotransferase -
  SCI_RS08045 (SCI_1577) - 1610629..1611081 (+) 453 WP_020998014.1 universal stress protein -
  SCI_RS08050 (SCI_1578) - 1611126..1612514 (-) 1389 WP_020998015.1 Cof-type HAD-IIB family hydrolase -
  SCI_RS08055 (SCI_1579) - 1612579..1613541 (+) 963 WP_006268265.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29721.06 Da        Isoelectric Point: 5.2508

>NTDB_id=50645 SCI_RS08035 WP_003070508.1 1608307..1609095(-) (codY) [Streptococcus constellatus subsp. pharyngis C1050]
MANLLAKTRKITSILRRSDERLQEELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHALSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKRRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=50645 SCI_RS08035 WP_003070508.1 1608307..1609095(-) (codY) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGCTTACAGGAAGAATTGCC
TTACAATGCTATTACTCAGCAGTTAGCTGAGATTATGGATTGCAATGCTTGTATTGTAAACAGCAAGGGGCGTCTTTTGG
GGTATTTTATGCGCTACAAGACGAATAATGACCGGGTGGAAGCATTTTATCAAACAAAAATCTTCCCAGAAGAGTATGTT
CGCACAGCGAATTTGATGTATGATACAGAAGCTAATCTTCCTGTCAATCATGCTTTATCTATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACGATTTCGCCTATTCATGTATCAGGGATTCGCTTAGGAACATTGATTGTTTGGC
GAAATGATAAAGAATTTGATGATGATGACTTGATCTTAGTTGAAATTGCAAGTACAGTAGTTGGGATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCCGTAACCATGGCTGTAAATACGCTATCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAACTAAATGGTAATGAAGGACAGTTGACAGCATCGGTCATTGCAGATCGTA
TTGGGATTACTCGCTCAGTGATTGTCAATGCTTTGCGTAAACTAGAGAGTGCAGGCATTATTGAGAGTCGTTCTTTAGGA
ATGAAAGGAACCTACCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAGGAGAGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473

Multiple sequence alignment