Detailed information NTG0506426

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2434_RS05270
• Genome accession: NZ_CP065058
• Coordinates: 1115307..1117400 (+)
• Length: 697 a.a.
• NCBI ID: WP_206157563.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ18
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1110307..1122400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2434_RS05250 (MCPGFBBE_01044)	-	1110488..1111771 (-)	1284	WP_206157561.1	homoserine dehydrogenase	-
I2434_RS05255 (MCPGFBBE_01045)	-	1111943..1112908 (+)	966	WP_206157562.1	polysaccharide deacetylase family protein	-
I2434_RS05260 (MCPGFBBE_01046)	-	1113210..1114016 (-)	807	WP_043025893.1	DNA/RNA non-specific endonuclease	-
I2434_RS05265 (MCPGFBBE_01047)	ndk	1114517..1114936 (-)	420	WP_012515690.1	nucleoside-diphosphate kinase	-
I2434_RS05270 (MCPGFBBE_01048)	clpC	1115307..1117400 (+)	2094	WP_206157563.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2434_RS05275 (MCPGFBBE_01049)	-	1117590..1120592 (-)	3003	WP_206157564.1	leucine-rich repeat domain-containing protein	-
I2434_RS05280 (MCPGFBBE_01050)	-	1120678..1120965 (-)	288	WP_206157565.1	hypothetical protein	-
I2434_RS05285 (MCPGFBBE_01051)	-	1120991..1122247 (-)	1257	WP_206157566.1	ISL3 family transposase	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76869.87 Da
• Isoelectric Point: 5.0726

>NTDB_id=506426 I2434_RS05270 WP_206157563.1 1115307..1117400(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MATYYGKDPFENMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAAAEGQEKQASSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEASNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAEEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGTND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=506426 I2434_RS05270 WP_206157563.1 1115307..1117400(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGGCAACCTATTATGGAAAAGACCCCTTTGAAAATATGGACGATATTTTCAATCAGTTAATGGGAAACATCGGCGGCTA
CCGCAGCGAAAATCGTCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAAGAATACCGGAAAACCGGTA
AGCTAGCTGCAGCTGAGGGACAAGAAAAACAGGCTAGCAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAC
CTGACCGAAGAAGCTCGGCAAGGCAGGCTAGATCCTGTGATCGGACGAAACGATGAGATTCAAGCGACCGCAGAAATTCT
AGCAAGACGAACCAAGAATAACCCTGTTCTTGTCGGTGACGCTGGTGTTGGTAAAACTGCTGTTGTCGAAGGCCTAGCCC
AGGCTATTGTCAACGGTGATGTGCCAGCTGCCATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCTTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAGGAGGCTAGCAATATCATTCT
CTTCTTTGACGAAATTCATCAAATCCTTGGTGCAGGGTCAGCTGGTTCAGACTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCTCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATTTTAATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTACCAGACTCTGTCTTGAAGGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGAAGAAGA
CTTTGAAAAGGCCTTAACTGCTAAGACACGCATTGAGGAGCTTCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGATATTGCAGAATCTGTTGAACGTCTAACTGGTGTCCCAGTCTCAAATATGGGGACTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAACAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGCTCCTTCCTCTTTGTTGGTCCGACTGGTG
TCGGCAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGGCAAGGTAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAACCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGCATTAGCCTTGAGGTGACTGATGATGTT
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCGATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGCATTACGGACTACTACCTAGATCACCCGACTGCTAAGCACCTATTAGCAAGTCTTGATCAAGATACTATTACAA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (257-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.063	100	0.481
clpE	Streptococcus mutans UA159	48.17	97.991	0.472
clpE	Streptococcus pneumoniae Rx1	50.156	92.109	0.462
clpE	Streptococcus pneumoniae D39	50.156	92.109	0.462
clpE	Streptococcus pneumoniae R6	50.156	92.109	0.462
clpE	Streptococcus pneumoniae TIGR4	50.952	90.387	0.461
clpC	Bacillus subtilis subsp. subtilis str. 168	45.673	89.527	0.409
clpC	Streptococcus mutans UA159	43.065	88.953	0.383
clpC	Streptococcus thermophilus LMD-9	42.289	90.244	0.382
clpC	Streptococcus pneumoniae Rx1	43.514	87.374	0.38
clpC	Streptococcus pneumoniae D39	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMG 18311	42.13	90.244	0.38
clpC	Streptococcus pneumoniae TIGR4	43.35	87.374	0.379
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376