Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I2434_RS03280 Genome accession   NZ_CP065058
Coordinates   683313..685115 (+) Length   600 a.a.
NCBI ID   WP_165623131.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 678313..690115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS03260 (MCPGFBBE_00649) queA 679365..680393 (-) 1029 WP_043025510.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I2434_RS03265 (MCPGFBBE_00650) - 680662..681366 (+) 705 WP_165623129.1 glucosamine-6-phosphate deaminase -
  I2434_RS03270 (MCPGFBBE_00651) - 681538..682254 (+) 717 WP_012515300.1 pseudouridine synthase -
  I2434_RS03275 (MCPGFBBE_00652) - 682346..683323 (+) 978 WP_165623130.1 competence protein CoiA family protein -
  I2434_RS03280 (MCPGFBBE_00653) pepF 683313..685115 (+) 1803 WP_165623131.1 oligoendopeptidase F Regulator
  I2434_RS03285 (MCPGFBBE_00654) - 685315..685872 (+) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  I2434_RS03290 (MCPGFBBE_00655) - 685862..686494 (+) 633 WP_012678252.1 HAD-IA family hydrolase -
  I2434_RS03295 (MCPGFBBE_00656) - 686545..687183 (+) 639 WP_038674841.1 HAD family hydrolase -
  I2434_RS03300 (MCPGFBBE_00657) - 687265..687972 (+) 708 WP_038674443.1 O-methyltransferase -
  I2434_RS03305 (MCPGFBBE_00658) prsA 688035..689036 (+) 1002 WP_165622619.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69058.80 Da        Isoelectric Point: 4.5408

>NTDB_id=506418 I2434_RS03280 WP_165623131.1 683313..685115(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSIYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=506418 I2434_RS03280 WP_165623131.1 683313..685115(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGTTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCTTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCATCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGTGCCTATTCTGGTGGTTCCTATGATACAAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAGACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGTGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATCCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCTAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACTTATCTGAAGTCTGGAAATTCAGATTATCCTCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGGGATTACCTAGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.833

100

0.728