Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2433_RS09375 Genome accession   NZ_CP065056
Coordinates   1943695..1945056 (-) Length   453 a.a.
NCBI ID   WP_111692139.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938695..1950056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS09355 (JDBNIEOD_01883) gltX 1939472..1940917 (-) 1446 WP_012678593.1 glutamate--tRNA ligase -
  I2433_RS09360 (JDBNIEOD_01884) - 1941525..1942238 (-) 714 WP_206152223.1 TIGR00266 family protein -
  I2433_RS09365 (JDBNIEOD_01885) - 1942366..1942872 (-) 507 WP_012678595.1 carbonic anhydrase -
  I2433_RS09370 (JDBNIEOD_01886) - 1943256..1943534 (+) 279 WP_206152224.1 hypothetical protein -
  I2433_RS09375 (JDBNIEOD_01887) radA 1943695..1945056 (-) 1362 WP_111692139.1 DNA repair protein RadA Machinery gene
  I2433_RS09380 (JDBNIEOD_01888) - 1945123..1945569 (-) 447 WP_014622233.1 dUTP diphosphatase -
  I2433_RS09385 (JDBNIEOD_01889) - 1945771..1946538 (-) 768 WP_138118716.1 epoxyqueuosine reductase QueH -
  I2433_RS09390 (JDBNIEOD_01890) - 1946700..1948496 (-) 1797 WP_206152225.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49360.78 Da        Isoelectric Point: 7.0274

>NTDB_id=506391 I2433_RS09375 WP_111692139.1 1943695..1945056(-) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=506391 I2433_RS09375 WP_111692139.1 1943695..1945056(-) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTACTCTTGCA
AGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTCTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTGAGAGAGGTTACTGCTGAGCTACTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATCGTAGGACATG
TCACCAAGGAGGGTACCCTAGCAGGGCCACGTATGCTGGAGCATATGGTTGATACTGTGCTTTATTTTGAAGGGGAAAGA
CACCACACCTTCCGAATTCTGCGAGCTGTTAAAAACCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAATCCCAGTCAGGTTTTCTTAGAGGAGCGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAACGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTATCTCAAATCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGCTACAAGGAAAAACCGACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGCGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(60-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.735

99.779

0.845
  radA Streptococcus pneumoniae D39

84.735

99.779

0.845
  radA Streptococcus pneumoniae R6

84.735

99.779

0.845
  radA Streptococcus pneumoniae TIGR4

84.735

99.779

0.845
  radA Streptococcus mitis NCTC 12261

84.292

99.779

0.841
  radA Streptococcus mitis SK321

84.292

99.779

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611