Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2433_RS08620 Genome accession   NZ_CP065056
Coordinates   1786937..1787425 (-) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1781937..1792425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS08600 (JDBNIEOD_01729) - 1784419..1785363 (+) 945 WP_012678501.1 magnesium transporter CorA family protein -
  I2433_RS08605 - 1785388..1785591 (-) 204 WP_041790572.1 hypothetical protein -
  I2433_RS08610 (JDBNIEOD_01730) - 1785622..1786272 (+) 651 WP_012678502.1 DUF1129 domain-containing protein -
  I2433_RS08615 (JDBNIEOD_01731) rpsR 1786539..1786778 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  I2433_RS08620 (JDBNIEOD_01732) ssbA 1786937..1787425 (-) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  I2433_RS08625 (JDBNIEOD_01733) rpsF 1787444..1787734 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  I2433_RS08630 (JDBNIEOD_01734) - 1788785..1788983 (-) 199 Protein_1648 HicB family protein -
  I2433_RS08635 (JDBNIEOD_01735) mutY 1789099..1790247 (+) 1149 WP_206152131.1 A/G-specific adenine glycosylase -
  I2433_RS08640 (JDBNIEOD_01736) - 1790536..1790820 (+) 285 WP_021320372.1 hypothetical protein -
  I2433_RS08645 (JDBNIEOD_01737) - 1791062..1791328 (+) 267 WP_043040081.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=506388 I2433_RS08620 WP_038674547.1 1786937..1787425(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=506388 I2433_RS08620 WP_038674547.1 1786937..1787425(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377