Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   JGX27_RS04395 Genome accession   NZ_CP077423
Coordinates   831905..835153 (+) Length   1082 a.a.
NCBI ID   WP_009853917.1    Uniprot ID   A0A1I7FG26
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 826905..840153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS04380 (JGX27_04380) pheS 827676..828719 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  JGX27_RS04385 (JGX27_04385) - 828755..829279 (+) 525 WP_009853915.1 N-acetyltransferase -
  JGX27_RS04390 (JGX27_04390) pheT 829350..831755 (+) 2406 WP_009853916.1 phenylalanine--tRNA ligase subunit beta -
  JGX27_RS04395 (JGX27_04395) rexB 831905..835153 (+) 3249 WP_009853917.1 ATP-dependent nuclease subunit B Machinery gene
  JGX27_RS04400 (JGX27_04400) rexA 835143..838775 (+) 3633 WP_009853918.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1082 a.a.        Molecular weight: 124272.67 Da        Isoelectric Point: 5.0650

>NTDB_id=506315 JGX27_RS04395 WP_009853917.1 831905..835153(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MKLLYTDIQYDMTEILVGEAVAQADAGKRVFYIAPNSLSFEKERAVLELLPDEASFAITVTRFAQMARYFVLNEAQAQVK
ESIDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTELHSAEKQEDLVKIFLAVNDIL
LANQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNVYQ
ASLDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHK
LYQGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNF
KQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPD
NLEGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHT
NKFVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAE
DTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAESI
ELPLIKDNMQTKTVSADVIEARFPSDELISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMK
DDSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGI
IDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKI
LENLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLK
AITRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3249 bp        

>NTDB_id=506315 JGX27_RS04395 WP_009853917.1 831905..835153(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAGATTTTAGTTGGAGAGGCAGTAGCGCAGGCAGATGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACCAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGCGCAGGTCAAG
GAAAGCATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTT
TGGGCGTTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTG
TGCTTGATTTGACAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTG
CTTGCCAATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTACGCT
TGAAAATGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAA
AATGTGCGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATGTTTACCAA
GCAAGTTTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCA
CGAGGCTTTTTCAAAATTATCAAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATG
ATAAAAAACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCGAAAGCTATTCGTCATAAG
CTTTATCAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGAT
TTTTGACAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATT
CGTTGGAGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTCGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTC
AAGCAAGAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCTAAGGAATT
CACGATTGTTTATAAGGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTT
TATTTAAGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGAT
AATCTAGAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTAT
TTTAACGCAATTTCAAACGATTTTTGGACAAGAAAAGTTATCGTTGGATGACTGTTTGTCCTTGATTCGCAGCGGAATGT
TAGCTGCGCAGTACCGTGTGGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACC
AATAAATTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGA
AGAACGTGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGTGAAAATATCAAGAAAAATC
ATTTTGCTGCCCTATCGTTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAA
GATACGGAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAAC
GGATGCTGAGGACATTGGCAATTATAAGGCCTTATTGTCGCGTGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGC
GTGAACTTAGCAAGGAAGAGCAAACTTTCTGGTCGGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAAGCATT
GAATTGCCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGA
GCTGATTTCGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCT
TGCAAGAGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCACCGTGTTTTTGAATTGGTCATGAAA
GATGATTCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGT
TTACGAAGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACGGCAACGATTTTACGTG
ATGATGCTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATT
ATTGACCGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCA
GAAATTCTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCGG
AGCATATTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACGACAGAGAAAATT
TTAGAAAATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTA
TCATCTGAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCGG
CAGAGCAGATTAAGAAGGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGCAAGTCAGTTCAAGGAGACCAATTGAAG
GCAATCACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCA
AGGCTTTTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(750-1028)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I7FG26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.085

100

0.441